View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_high_52 (Length: 243)
Name: NF0529_high_52
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_high_52 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 22 - 243
Target Start/End: Original strand, 56199961 - 56200182
Alignment:
| Q |
22 |
aagcatttgtgtgcttctgtcgtaaattgttgcgattctgattcgttaaatcaacaacctattggtttacaaaatccacaacttcttgcaagagagaccg |
121 |
Q |
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| T |
56199961 |
aagcatttgtgtgcttctgtcataaattgttgcgattctgattcgttaaatcaacaacctattggtttacaaaatccacaacttcttgcaagagagaccg |
56200060 |
T |
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| Q |
122 |
tgtttagtgtaagtgagattgaagcactttatgaacttttcaagaagatcagcagtgcagtcattgatgatggactaattaataaggtcagctatgatag |
221 |
Q |
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| T |
56200061 |
tgtttagtgtaagtgagattgaagcactttatgaacttttcaagaagatcagcagtgcagtcattgatgatggactaattaataaggtcagctatgatag |
56200160 |
T |
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| Q |
222 |
aacattatggcgtcgtttgatc |
243 |
Q |
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| T |
56200161 |
aacattatggcgtcgtttgatc |
56200182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 42160833 - 42160902
Alignment:
| Q |
125 |
ttagtgtaagtgagattgaagcactttatgaacttttcaagaagatcagcagtgcagtcattgatgatgg |
194 |
Q |
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| T |
42160833 |
ttagtgtaagtgaaattgaagctctttatgagctctttaaaaagatcagcagtgcggtgattgatgatgg |
42160902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 28186857 - 28186828
Alignment:
| Q |
214 |
tatgatagaacattatggcgtcgtttgatc |
243 |
Q |
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| T |
28186857 |
tatgatagaacattatggcgtcgtttgatc |
28186828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 24091586 - 24091653
Alignment:
| Q |
127 |
agtgtaagtgagattgaagcactttatgaacttttcaagaagatcagcagtgcagtcattgatgatgg |
194 |
Q |
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| T |
24091586 |
agtgttagtgaaatagaagcactgtatgagctcttcaaaaagatcagcagtgctgtaattgatgatgg |
24091653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 6807411 - 6807440
Alignment:
| Q |
214 |
tatgatagaacattatggcgtcgtttgatc |
243 |
Q |
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| T |
6807411 |
tatgatagaacattatggcgtcgtttgatc |
6807440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 38869089 - 38869118
Alignment:
| Q |
214 |
tatgatagaacattatggcgtcgtttgatc |
243 |
Q |
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| T |
38869089 |
tatgatagaacattatggcgtcgtttgatc |
38869118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 10062950 - 10063018
Alignment:
| Q |
129 |
tgtaagtgagattgaagcactttatgaacttttcaagaagatcagcagtgcagtcattgatgatggact |
197 |
Q |
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|||||| ||| |||||||| | || ||||| || |||||||||||||||||||| |||| |||||||| |
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| T |
10062950 |
tgtaagcgaggttgaagcattgtacgaactatttaagaagatcagcagtgcagttgttgacgatggact |
10063018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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