View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_high_55 (Length: 222)
Name: NF0529_high_55
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_high_55 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 16309871 - 16310074
Alignment:
| Q |
19 |
tatgagtattgacgtggcaatatattaccggatacatgtataaaaaataattgtattaattaattaaatatgcgtcacaatatacatacatttggaatga |
118 |
Q |
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| T |
16309871 |
tatgagtattgacgtggcaatatattaccggatacatgtataaaaaataattgtattaattaattaaatatgcgtcacaatatacatacatttggaatga |
16309970 |
T |
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| Q |
119 |
tattgaggtcattagaaaagttttagaagagtccccgtgagcatattggtagagacatgcattgttatttgcaggattcgggtttgaacctatgctactc |
218 |
Q |
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| T |
16309971 |
tattgaggtcattagaaaagttttagaagagtccccgtgagcatattggtagagacatgcattgttatttgcaggatttggatttgaacctctgacactc |
16310070 |
T |
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| Q |
219 |
cact |
222 |
Q |
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|||| |
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| T |
16310071 |
cact |
16310074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 10602005 - 10602049
Alignment:
| Q |
149 |
gtccccgtgagcatattggtagagacatgcattgttatttgcagg |
193 |
Q |
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||||| |||||||| |||| |||||||||||||||||| |||||| |
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| T |
10602005 |
gtccctgtgagcatgttggcagagacatgcattgttatatgcagg |
10602049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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