View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_high_6 (Length: 462)
Name: NF0529_high_6
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 28 - 447
Target Start/End: Original strand, 40308370 - 40308789
Alignment:
| Q |
28 |
caccaaaatctagtggtttgatacctgtaaaccatgaagttcagactctatttcagatgtttctgaatcacccataggcttagtgaagtttccactatca |
127 |
Q |
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| T |
40308370 |
caccaaaatctagtggtttgatacctgtaaaccatgaagttcagactctatttcagatgtttttgaatcacccataggcttagtgaagtttccactatca |
40308469 |
T |
|
| Q |
128 |
gcttttggaggctatcattgtagataataaccacaagtcaattatataacatagttatcacatataaagcaccaacacgacagtttcaaattattctcac |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40308470 |
gcttttggaggctatcattgtagataataaccacaagtcaattatataacatagttatcacatataaagcaccaacatgacagtttcaaattattctcac |
40308569 |
T |
|
| Q |
228 |
cttactttcaaattctggaataacacacaatacccctgctttttcaagagatgtgtgtttgtcctcttccgctgtatttgacacggcttgtaagcatgat |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40308570 |
cttactttcaaattctggaataacacacaatacccctgctttttcaagagatgtgtgtttgtcctcttccgctgtatttgacacggcttgtaagcatgat |
40308669 |
T |
|
| Q |
328 |
tggatacctaaagatatatactcaaccgtctctttgacaactgctgctgattttggcttattgatgcaaaattcatcaatgtattcataatatcgcttgt |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40308670 |
tggatacctaaagatatatactcaaccgtctctttgacaactgctgctgattttggcttattgatgcaaaattcatcaatgtattcataatatcgtttgt |
40308769 |
T |
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| Q |
428 |
cagtgactatgttttcgtcc |
447 |
Q |
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| T |
40308770 |
cagtgactatgttttcgtcc |
40308789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 14690197 - 14690157
Alignment:
| Q |
246 |
aataacacacaatacccctgctttttcaagagatgtgtgtt |
286 |
Q |
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||||||||||||||| |||| ||||||||||||||| |||| |
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| T |
14690197 |
aataacacacaatacgcctgttttttcaagagatgtatgtt |
14690157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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