View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0529_high_9 (Length: 454)

Name: NF0529_high_9
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0529_high_9
NF0529_high_9
[»] chr5 (25 HSPs)
chr5 (230-422)||(41431951-41432143)
chr5 (261-426)||(41286899-41287063)
chr5 (261-407)||(41324815-41324961)
chr5 (261-426)||(41328773-41328938)
chr5 (261-426)||(41316732-41316897)
chr5 (261-426)||(41332706-41332871)
chr5 (56-235)||(31177574-31177753)
chr5 (56-235)||(31187637-31187816)
chr5 (56-235)||(31225962-31226141)
chr5 (261-407)||(41366904-41367050)
chr5 (56-204)||(41317114-41317262)
chr5 (56-260)||(41325122-41325326)
chr5 (261-406)||(31188002-31188147)
chr5 (261-426)||(41337513-41337678)
chr5 (261-426)||(31177939-31178104)
chr5 (257-392)||(41310967-41311106)
chr5 (56-235)||(41337864-41338043)
chr5 (90-260)||(41329099-41329269)
chr5 (56-236)||(41369920-41370100)
chr5 (56-255)||(41287229-41287428)
chr5 (56-235)||(41367236-41367415)
chr5 (261-419)||(31225618-31225776)
chr5 (340-412)||(14235866-14235938)
chr5 (37-235)||(41305395-41305593)
chr5 (56-204)||(41333088-41333236)
[»] chr4 (2 HSPs)
chr4 (257-426)||(17248815-17248984)
chr4 (33-213)||(17248431-17248611)
[»] chr3 (3 HSPs)
chr3 (170-260)||(22971933-22972023)
chr3 (170-235)||(22946386-22946451)
chr3 (170-235)||(22986259-22986324)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 230 - 422
Target Start/End: Complemental strand, 41432143 - 41431951
Alignment:
Q  230 aaatcatgaggattattaacaaacctttcagtgtttctttgatgatagacttcaagtatatcaattagtgcaactcagtctcatccacataccctttcat 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41432143 aaatcatgaggattattaacaaacctttcagtgtttctttgatgatagacttcaagtatatcaattagtgcaactcagtctcatccacataccctttcat 41432044  T
Q  330 atcaaatactcttcttacctcagcttgtgcttcttccatcacattcgggttctttgccatctcagacatcgcccataagacaaccactgacga 422  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41432043 atcaaacactcttcttacctcagcttgtgcttcttccatcacattcgggttcttcgccatctcagacatcgcccataagacaaccactgacga 41431951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 261 - 426
Target Start/End: Complemental strand, 41287063 - 41286899
Alignment:
Q  261 tgtttctttgatgatagacttcaagtatatcaattagtgcaactcagtctcatccacataccctttcatatcaaatactcttcttacctcagcttgtgct 360  Q
    |||||||||||| | |||||||||||||||||||| ||||||||| |||||| |||||||||| ||  ||||||| ||||||||||||||||||||||||    
T  41287063 tgtttctttgataacagacttcaagtatatcaattggtgcaactctgtctcaaccacatacccctttctatcaaacactcttcttacctcagcttgtgct 41286964  T
Q  361 tcttccatcacattcgggttctttgccatctcagacatcgcccataagacaaccactgacgatgtt 426  Q
    | ||||||||| || || |||||| |||||||||||||| | ||||| ||| || |||||||||||    
T  41286963 t-ttccatcacctttggattctttaccatctcagacatccctcataacacagcccctgacgatgtt 41286899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 261 - 407
Target Start/End: Complemental strand, 41324961 - 41324815
Alignment:
Q  261 tgtttctttgatgatagacttcaagtatatcaattagtgcaactcagtctcatccacataccctttcatatcaaatactcttcttacctcagcttgtgct 360  Q
    |||||| ||||| | ||| || ||||||||||||| ||||||||| |||||||||||| |||| ||| ||||||| ||||||||||||||||||||||||    
T  41324961 tgtttccttgatcacagattttaagtatatcaattggtgcaactctgtctcatccacaaaccccttcctatcaaaaactcttcttacctcagcttgtgct 41324862  T
Q  361 tcttccatcacattcgggttctttgccatctcagacatcgcccataa 407  Q
    ||||||||||| || || |||||| |||||||||| |||||||||||    
T  41324861 tcttccatcacctttggattctttaccatctcagatatcgcccataa 41324815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 261 - 426
Target Start/End: Complemental strand, 41328938 - 41328773
Alignment:
Q  261 tgtttctttgatgatagacttcaagtatatcaattagtgcaactcagtctcatccacataccctttcatatcaaatactcttcttacctcagcttgtgct 360  Q
    ||||||||||||||  ||||| ||||||||||||| ||||||||| ||||||||||||||| | ||  ||||||| ||||| ||||| ||| ||||||||    
T  41328938 tgtttctttgatgacggactttaagtatatcaattggtgcaactctgtctcatccacatactcctttttatcaaacactctacttacttcatcttgtgct 41328839  T
Q  361 tcttccatcacattcgggttctttgccatctcagacatcgcccataagacaaccactgacgatgtt 426  Q
    |||||||| || || ||||||||  |||||||||||||||||||||| | ||||  ||||||||||    
T  41328838 tcttccattacctttgggttcttcaccatctcagacatcgcccataacagaacctgtgacgatgtt 41328773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 261 - 426
Target Start/End: Complemental strand, 41316897 - 41316732
Alignment:
Q  261 tgtttctttgatgatagacttcaagtatatcaattagtgcaactcagtctcatccacataccctttcatatcaaatactcttcttacctcagcttgtgct 360  Q
    |||||||||||||| |||||| ||||||||||||| || |||||| |||||||||||||| || ||  ||||||| ||||||||||| ||||||||||||    
T  41316897 tgtttctttgatgacagactttaagtatatcaattggtacaactctgtctcatccacatatccctttttatcaaacactcttcttacttcagcttgtgct 41316798  T
Q  361 tcttccatcacattcgggttctttgccatctcagacatcgcccataagacaaccactgacgatgtt 426  Q
    | |||||| ||||| | ||| ||| ||||| ||||||||||||| |  ||| || |||||||||||    
T  41316797 tgttccattacatttgagttttttaccatcgcagacatcgcccaaatcacagcctctgacgatgtt 41316732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 261 - 426
Target Start/End: Complemental strand, 41332871 - 41332706
Alignment:
Q  261 tgtttctttgatgatagacttcaagtatatcaattagtgcaactcagtctcatccacataccctttcatatcaaatactcttcttacctcagcttgtgct 360  Q
    ||||||||||| || |||||| ||||||||||||| ||||||||| | ||||||||||||||| ||  ||||||| ||||||||||| |||   ||||||    
T  41332871 tgtttctttgacgacagactttaagtatatcaattggtgcaactctgactcatccacatacccctttttatcaaacactcttcttacttcaatctgtgct 41332772  T
Q  361 tcttccatcacattcgggttctttgccatctcagacatcgcccataagacaaccactgacgatgtt 426  Q
    |||||||  || || ||||||||| |||||||||||||||||||||| |  ||| |||||||||||    
T  41332771 tcttccaatacctttgggttctttaccatctcagacatcgcccataacaatacctctgacgatgtt 41332706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 56 - 235
Target Start/End: Original strand, 31177574 - 31177753
Alignment:
Q  56 ccaaatgactcactcatctcaagttcttcgttcttcattccattatgaagcttccaatcaaggtggcaaagtaacatagcaagtggcaactcgacattgg 155  Q
    |||||||||||| |||| || |||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||  |||||| |||| ||| |  ||||    
T  31177574 ccaaatgactcagtcatatctagttcttcattcttcattccattaggaagcttccaatcaaagtggtaaagtaactgagcaagaggcagctcaatgttgg 31177673  T
Q  156 gtaaagcaaatgctatgcctggaaaaattctccttccagcaccaaatggaatatattcaaagtttgtacctttaaaatca 235  Q
     |||  ||||||| ||||||||| | ||||| ||||||||||| || || || || ||||||||||||||||| ||||||    
T  31177674 ataagccaaatgccatgcctggacacattcttcttccagcaccgaacggtatgtactcaaagtttgtacctttgaaatca 31177753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 56 - 235
Target Start/End: Original strand, 31187637 - 31187816
Alignment:
Q  56 ccaaatgactcactcatctcaagttcttcgttcttcattccattatgaagcttccaatcaaggtggcaaagtaacatagcaagtggcaactcgacattgg 155  Q
    |||||||||||| |||| || |||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||  |||||| |||| ||| |  ||||    
T  31187637 ccaaatgactcagtcatatctagttcttcattcttcattccattaggaagcttccaatcaaagtggtaaagtaactgagcaagaggcagctcaatgttgg 31187736  T
Q  156 gtaaagcaaatgctatgcctggaaaaattctccttccagcaccaaatggaatatattcaaagtttgtacctttaaaatca 235  Q
     |||  ||||||| ||||||||| | ||||| ||||||||||| || || || |||||||| ||||| ||||| ||||||    
T  31187737 ataagccaaatgccatgcctggacacattcttcttccagcaccgaacggtatgtattcaaaatttgtgcctttgaaatca 31187816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 56 - 235
Target Start/End: Complemental strand, 31226141 - 31225962
Alignment:
Q  56 ccaaatgactcactcatctcaagttcttcgttcttcattccattatgaagcttccaatcaaggtggcaaagtaacatagcaagtggcaactcgacattgg 155  Q
    |||||||||||| |||| || |||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||  |||||| |||| ||| |  ||||    
T  31226141 ccaaatgactcagtcatatctagttcttcattcttcattccattaggaagcttccaatcaaagtggtaaagtaactgagcaagaggcagctcaatgttgg 31226042  T
Q  156 gtaaagcaaatgctatgcctggaaaaattctccttccagcaccaaatggaatatattcaaagtttgtacctttaaaatca 235  Q
     |||  ||||||| ||||||||| | ||||| ||||||||||| || || || |||||||| ||||| ||||| ||||||    
T  31226041 ataagccaaatgccatgcctggacacattcttcttccagcaccgaacggtatgtattcaaaatttgtgcctttgaaatca 31225962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 261 - 407
Target Start/End: Complemental strand, 41367050 - 41366904
Alignment:
Q  261 tgtttctttgatgatagacttcaagtatatcaattagtgcaactcagtctcatccacataccctttcatatcaaatactcttcttacctcagcttgtgct 360  Q
    ||||||||||||||  || || ||||||||||||| ||||||||| ||||||| |||||| || ||  ||||||| ||||||||||||||| ||||||||    
T  41367050 tgtttctttgatgacggattttaagtatatcaattggtgcaactctgtctcattcacatatccctttttatcaaacactcttcttacctcaacttgtgct 41366951  T
Q  361 tcttccatcacattcgggttctttgccatctcagacatcgcccataa 407  Q
     ||||||| ||  |||| |||||| ||||||||||||||| ||||||    
T  41366950 gcttccattaccatcggattctttaccatctcagacatcgtccataa 41366904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 56 - 204
Target Start/End: Complemental strand, 41317262 - 41317114
Alignment:
Q  56 ccaaatgactcactcatctcaagttcttcgttcttcattccattatgaagcttccaatcaaggtggcaaagtaacatagcaagtggcaactcgacattgg 155  Q
    |||||||||||| |||| || | |||||| ||||||||||||||  ||||||||||||||| |||  |||||||| ||||||| |||| ||| |||||||    
T  41317262 ccaaatgactcagtcatatccaattcttcattcttcattccattgggaagcttccaatcaaagtgataaagtaacttagcaagaggcagctcaacattgg 41317163  T
Q  156 gtaaagcaaatgctatgcctggaaaaattctccttccagcaccaaatgg 204  Q
    | || |||||||| || |||||| | || ||||||||||||||||||||    
T  41317162 gcaaggcaaatgcaatacctggacacatcctccttccagcaccaaatgg 41317114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 56 - 260
Target Start/End: Complemental strand, 41325326 - 41325122
Alignment:
Q  56 ccaaatgactcactcatctcaagttcttcgttcttcattccattatgaagcttccaatcaaggtggcaaagtaacatagcaagtggcaactcgacattgg 155  Q
    |||||||||||  |||| || |||||||| |||||||||  |||  ||||||||||||||| |||| |||||||  ||||||| ||||| || || ||||    
T  41325326 ccaaatgactcggtcatatctagttcttcattcttcattttattgggaagcttccaatcaaagtggtaaagtaaactagcaagaggcaattcaacgttgg 41325227  T
Q  156 gtaaagcaaatgctatgcctggaaaaattctccttccagcaccaaatggaatatattcaaagtttgtacctttaaaatcatgaggattattaacaaacct 255  Q
    |||| |||||||| || || ||| | || || ||||||||||||||||| || |||||||||| ||| ||||| ||||||   ||| |||||||||||||    
T  41325226 gtaaggcaaatgcaattccgggacacatccttcttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacct 41325127  T
Q  256 ttcag 260  Q
     ||||    
T  41325126 ctcag 41325122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 261 - 406
Target Start/End: Original strand, 31188002 - 31188147
Alignment:
Q  261 tgtttctttgatgatagacttcaagtatatcaattagtgcaactcagtctcatccacataccctttcatatcaaatactcttcttacctcagcttgtgct 360  Q
    ||||||| |||| |||||||| ||||||||||||| ||||||||| || ||||| |||||||| ||  ||||||| ||| ||||||| ||||||||||||    
T  31188002 tgtttctctgattatagactttaagtatatcaattggtgcaactctgtttcatcgacatacccctttttatcaaacacttttcttacttcagcttgtgct 31188101  T
Q  361 tcttccatcacattcgggttctttgccatctcagacatcgcccata 406  Q
    |  ||||| |  || ||||||||| |||||||||| ||| ||||||    
T  31188102 ttctccattatctttgggttctttaccatctcagatatcccccata 31188147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 261 - 426
Target Start/End: Complemental strand, 41337678 - 41337513
Alignment:
Q  261 tgtttctttgatgatagacttcaagtatatcaattagtgcaactcagtctcatccacataccctttcatatcaaatactcttcttacctcagcttgtgct 360  Q
    |||||||||||||| | |||| |||||| |||| |  |||||||| ||||| || |||||||| ||  ||||||| ||||||||||||||| ||||||||    
T  41337678 tgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtgct 41337579  T
Q  361 tcttccatcacattcgggttctttgccatctcagacatcgcccataagacaaccactgacgatgtt 426  Q
    |||||||| ||  | |||||||||  |||||| |||||||||||||  ||||   |||||||||||    
T  41337578 tcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtt 41337513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 261 - 426
Target Start/End: Original strand, 31177939 - 31178104
Alignment:
Q  261 tgtttctttgatgatagacttcaagtatatcaattagtgcaactcagtctcatccacataccctttcatatcaaatactcttcttacctcagcttgtgct 360  Q
    |||||||||||| |||||||| ||||||||||| | ||||||||| || ||||| |||| ||| ||  ||||||| ||| ||||||| ||||||||||||    
T  31177939 tgtttctttgattatagactttaagtatatcaaatggtgcaactctgtttcatcgacatgcccctttttatcaaacacttttcttacttcagcttgtgct 31178038  T
Q  361 tcttccatcacattcgggttctttgccatctcagacatcgcccataagacaaccactgacgatgtt 426  Q
    || | ||| |  || |||||||||  ||||||||| ||| ||||||| |||||  |||| ||||||    
T  31178039 tccttcattatctttgggttctttatcatctcagatatcccccataacacaactcctgatgatgtt 31178104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 257 - 392
Target Start/End: Complemental strand, 41311106 - 41310967
Alignment:
Q  257 tcagtgtttctttgatgatagacttcaagtatatcaattagtgcaactcagtctcatccacata----ccctttcatatcaaatactcttcttacctcag 352  Q
    |||||||||||||||||| | |||| |||||||||||   |||||||||  |||||||||||||    ||| ||  ||||||| ||||||||||| |||     
T  41311106 tcagtgtttctttgatgacaaactttaagtatatcaacaggtgcaactccatctcatccacatatatacccctttttatcaaacactcttcttacttcaa 41311007  T
Q  353 cttgtgcttcttccatcacattcgggttctttgccatctc 392  Q
    |||||||||||||||| || || ||||||||| |||||||    
T  41311006 cttgtgcttcttccattacctttgggttctttaccatctc 41310967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 56 - 235
Target Start/End: Complemental strand, 41338043 - 41337864
Alignment:
Q  56 ccaaatgactcactcatctcaagttcttcgttcttcattccattatgaagcttccaatcaaggtggcaaagtaacatagcaagtggcaactcgacattgg 155  Q
    |||||||| ||| |||| ||||||||||  |   ||||||||||  |||| |||||||||| |||  |||| ||| ||||||| |||| ||| |||||||    
T  41338043 ccaaatgattcagtcatatcaagttcttgatggctcattccatttggaagtttccaatcaaagtgataaagcaacttagcaagaggcagctcaacattgg 41337944  T
Q  156 gtaaagcaaatgctatgcctggaaaaattctccttccagcaccaaatggaatatattcaaagtttgtacctttaaaatca 235  Q
    | || |||||||| || |||||| | || || ||||||||||||||||| ||  ||||||||| ||| ||||| ||||||    
T  41337943 gcaaggcaaatgcaatacctggacacatccttcttccagcaccaaatggtattaattcaaagtctgtgcctttgaaatca 41337864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 260
Target Start/End: Complemental strand, 41329269 - 41329099
Alignment:
Q  90 tcattccattatgaagcttccaatcaaggtggcaaagtaacatagcaagtggcaactcgacattgggtaaagcaaatgctatgcctggaaaaattctcct 189  Q
    ||||||||||  ||||||||||||||| |||  |||||||| ||||||| |||| ||| ||||||||||  |||||||  || |||||| | || || ||    
T  41329269 tcattccattgggaagcttccaatcaaagtgataaagtaacttagcaagaggcagctcaacattgggtatggcaaatgaaatacctggacacatccttct 41329170  T
Q  190 tccagcaccaaatggaatatattcaaagtttgtacctttaaaatcatgaggattattaacaaacctttcag 260  Q
    ||||||||||||||| ||  |||| ||||  || ||||| ||||||   ||| ||||||||||||| ||||    
T  41329169 tccagcaccaaatggtatgaattcgaagtccgtgcctttgaaatcaattggactattaacaaacctctcag 41329099  T

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Target: chr5; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 41370100 - 41369920
Alignment:
Q  56 ccaaatgactcactcatctcaagttcttcgttcttcattccattatgaagcttccaatcaaggtggcaaagtaacatagcaagtggcaactcgacattgg 155  Q
    |||||||| ||| |||| || | |||||| ||||||||| ||||  ||||||||||||||| |||| |||||||  ||||||| |||||||| || || |    
T  41370100 ccaaatgattcagtcatatccaattcttcattcttcatttcattgggaagcttccaatcaaagtggtaaagtaaactagcaagaggcaactcaacgttag 41370001  T
Q  156 gtaaagcaaatgctatgcctggaaaaattctccttccagcaccaaatggaatatattcaaagtttgtacctttaaaatcat 236  Q
    ||||  ||||    ||||||||| | || ||||| || ||| ||||||| || |||||||||| | ||||||| |||||||    
T  41370000 gtaagccaaacataatgcctggacacatcctcctccctgcatcaaatggtatgtattcaaagtctatacctttgaaatcat 41369920  T

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Target: chr5; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 56 - 255
Target Start/End: Complemental strand, 41287428 - 41287229
Alignment:
Q  56 ccaaatgactcactcatctcaagttcttcgttcttcattccattatgaagcttccaatcaaggtggcaaagtaacatagcaagtggcaactcgacattgg 155  Q
    |||||||||||| |||| |||||||||||   ||||||||||||  ||||||||||||||| |||  |||||||   |||||| || | ||| || ||||    
T  41287428 ccaaatgactcagtcatatcaagttcttcacacttcattccattgagaagcttccaatcaaagtgataaagtaattcagcaagaggaagctcaacgttgg 41287329  T
Q  156 gtaaagcaaatgctatgcctggaaaaattctccttccagcaccaaatggaatatattcaaagtttgtacctttaaaatcatgaggattattaacaaacct 255  Q
    |||   | || || ||||||||  | || |||||||||||||||||||| || ||||| |||| ||| || || ||||||   ||| |||||||||||||    
T  41287328 gtatgccgaaggcaatgcctgggcacatcctccttccagcaccaaatggtatgtattcgaagtctgtgccattgaaatcaattggactattaacaaacct 41287229  T

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Target: chr5; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 56 - 235
Target Start/End: Complemental strand, 41367415 - 41367236
Alignment:
Q  56 ccaaatgactcactcatctcaagttcttcgttcttcattccattatgaagcttccaatcaaggtggcaaagtaacatagcaagtggcaactcgacattgg 155  Q
    |||||||||||  |||| || | |||||| ||||||||||||||  |||||||||||||||  ||| ||||||||  ||| |  || | ||| |  ||||    
T  41367415 ccaaatgactccgtcatatctaattcttcattcttcattccatttggaagcttccaatcaaaatggtaaagtaactgagctaaaggtagctctatgttgg 41367316  T
Q  156 gtaaagcaaatgctatgcctggaaaaattctccttccagcaccaaatggaatatattcaaagtttgtacctttaaaatca 235  Q
    |||| |||||||| || ||  || | || |||||||||||||||||||| || |||||||||| ||| ||||| ||||||    
T  41367315 gtaaggcaaatgcaatacccagacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatca 41367236  T

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Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 419
Target Start/End: Complemental strand, 31225776 - 31225618
Alignment:
Q  261 tgtttctttgatgatagacttcaagtatatcaattagtgcaactcagtctcatccacataccctttcatatcaaatactcttcttacctcagcttgtgct 360  Q
    ||||||| | || |||||||| |||||||| |||| ||||||||| || ||||| ||||  || ||  ||||||| |   ||||||| ||||||||||||    
T  31225776 tgtttctctaattatagactttaagtatattaattggtgcaactctgtttcatcgacatgtccctttttatcaaacatgtttcttacttcagcttgtgct 31225677  T
Q  361 tcttccatcacattcgggttctttgccatctcagacatcgcccataagacaaccactga 419  Q
    || ||||| |  || ||||||||| |||||||||| ||| ||||||| |||||| ||||    
T  31225676 tcctccattatctttgggttctttaccatctcagatatcccccataacacaacccctga 31225618  T

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Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 412
Target Start/End: Complemental strand, 14235938 - 14235866
Alignment:
Q  340 cttcttacctcagcttgtgcttcttccatcacattcgggttctttgccatctcagacatcgcccataagacaa 412  Q
    ||||||||||||||||||||||||||||||||  | ||||||||| | |||||||||||| || |||| ||||    
T  14235938 cttcttacctcagcttgtgcttcttccatcaccctagggttctttacaatctcagacatccccaataacacaa 14235866  T

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Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 235
Target Start/End: Complemental strand, 41305593 - 41305395
Alignment:
Q  37 ttttcttcttagactaaagccaaatgactcactcatctcaagttcttcgttcttcattccattatgaagcttccaatcaaggtggcaaagtaacatagca 136  Q
    |||||||| || |||||  |||||||||||  |||| ||||||||||  |   ||||||| ||  ||||||||||||||| ||   |||||||   ||||    
T  41305593 ttttcttcctacactaagcccaaatgactcggtcatatcaagttcttgatggctcattccgttgggaagcttccaatcaaagttataaagtaattcagca 41305494  T
Q  137 agtggcaactcgacattgggtaaagcaaatgctatgcctggaaaaattctccttccagcaccaaatggaatatattcaaagtttgtacctttaaaatca 235  Q
    || || |  || ||||| | ||| |||||||| ||||| ||| | || |||||||||||||||||||| || |||||||||| ||| ||||| ||||||    
T  41305493 agaggaagttcaacatttgataaggcaaatgcaatgcccggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatca 41305395  T

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Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 204
Target Start/End: Complemental strand, 41333236 - 41333088
Alignment:
Q  56 ccaaatgactcactcatctcaagttcttcgttcttcattccattatgaagcttccaatcaaggtggcaaagtaacatagcaagtggcaactcgacattgg 155  Q
    |||||||||||  |||| || |||||||| |||||||||  |||  ||||||||||||||| ||||||||||||   |||||| || | ||| |  || |    
T  41333236 ccaaatgactcggtcatatctagttcttcattcttcattttattgggaagcttccaatcaaagtggcaaagtaattgagcaagaggtagctcaatgtttg 41333137  T
Q  156 gtaaagcaaatgctatgcctggaaaaattctccttccagcaccaaatgg 204  Q
    |||  |||||||| || || ||| | || ||||||||||||||||||||    
T  41333136 gtagggcaaatgcaattccgggacacatcctccttccagcaccaaatgg 41333088  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 257 - 426
Target Start/End: Original strand, 17248815 - 17248984
Alignment:
Q  257 tcagtgtttctttgatgatagacttcaagtatatcaattagtgcaactcagtctcatccacataccctttcatatcaaatactcttcttacctcagcttg 356  Q
    |||||||||||||||||| ||| || |||||||| ||||  | |||||| || ||||| |||||||| ||  ||||||| || |||||||||||||||||    
T  17248815 tcagtgtttctttgatgacagaatttaagtatattaattgatccaactccgtttcatctacatacccctttctatcaaaaacacttcttacctcagcttg 17248914  T
Q  357 tgcttcttccatcacattcgggttctttgccatctcagacatcgcccataagacaaccactgacgatgtt 426  Q
    |||| |||||||||| || ||||| |||   |||||||||||  ||||||| |||| | | |||||||||    
T  17248915 tgctgcttccatcacctttgggttttttattatctcagacattccccataacacaatcccagacgatgtt 17248984  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 33 - 213
Target Start/End: Original strand, 17248431 - 17248611
Alignment:
Q  33 cattttttcttcttagactaaagccaaatgactcactcatctcaagttcttcgttcttcattccattatgaagcttccaatcaaggtggcaaagtaacat 132  Q
    |||||||||||||||   |||  |||||||||||  |||| || || ||||| ||||||||| ||||  |||||||||||||||  ||| |||||||       
T  17248431 cattttttcttcttattgtaatcccaaatgactcggtcatatctagatcttcattcttcatttcattgggaagcttccaatcaaaatggtaaagtaattg 17248530  T
Q  133 agcaagtggcaactcgacattgggtaaagcaaatgctatgcctggaaaaattctccttccagcaccaaatggaatatattc 213  Q
    |||||| |||||||| |  |||||||   ||||||| ||||| ||| |||| |||||||||||||||||||| || |||||    
T  17248531 agcaagaggcaactcaatgttgggtatgccaaatgcaatgcccggacaaatcctccttccagcaccaaatggtatgtattc 17248611  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 170 - 260
Target Start/End: Original strand, 22971933 - 22972023
Alignment:
Q  170 atgcctggaaaaattctccttccagcaccaaatggaatatattcaaagtttgtacctttaaaatcatgaggattattaacaaacctttcag 260  Q
    ||||||||| ||||||| |||||||||||||||||||| || ||||| ||||| ||||| |||||| ||| | ||| || ||| |||||||    
T  22971933 atgcctggacaaattcttcttccagcaccaaatggaatgtactcaaaatttgttcctttgaaatcaagagaactatcaataaatctttcag 22972023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 22946386 - 22946451
Alignment:
Q  170 atgcctggaaaaattctccttccagcaccaaatggaatatattcaaagtttgtacctttaaaatca 235  Q
    ||||| ||| ||||||||||||| |||||||||||||| || ||||| ||||| ||||| ||||||    
T  22946386 atgcccggacaaattctccttccggcaccaaatggaatgtactcaaaatttgttcctttgaaatca 22946451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 22986259 - 22986324
Alignment:
Q  170 atgcctggaaaaattctccttccagcaccaaatggaatatattcaaagtttgtacctttaaaatca 235  Q
    ||||| ||| |||||||||||||||||||||||||||| || ||||| || || ||||| ||||||    
T  22986259 atgccaggacaaattctccttccagcaccaaatggaatgtactcaaaattagttcctttgaaatca 22986324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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