View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0529_low_1 (Length: 863)

Name: NF0529_low_1
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0529_low_1
NF0529_low_1
[»] scaffold0256 (6 HSPs)
scaffold0256 (645-788)||(11338-11481)
scaffold0256 (14-109)||(12192-12287)
scaffold0256 (14-109)||(14422-14517)
scaffold0256 (114-178)||(12099-12163)
scaffold0256 (253-331)||(11797-11875)
scaffold0256 (227-258)||(11906-11937)
[»] chr6 (13 HSPs)
chr6 (264-436)||(16783655-16783826)
chr6 (645-784)||(16874099-16874238)
chr6 (645-784)||(16580239-16580378)
chr6 (645-784)||(16615002-16615141)
chr6 (670-784)||(16572278-16572392)
chr6 (14-109)||(16873432-16873527)
chr6 (465-557)||(16984025-16984111)
chr6 (114-178)||(16873556-16873620)
chr6 (14-109)||(16571432-16571527)
chr6 (253-331)||(16571888-16571966)
chr6 (125-178)||(16571563-16571616)
chr6 (725-788)||(16977632-16977695)
chr6 (249-295)||(16832437-16832483)
[»] chr2 (13 HSPs)
chr2 (644-788)||(21628995-21629139)
chr2 (264-537)||(32791984-32792251)
chr2 (669-786)||(233816-233933)
chr2 (15-109)||(235793-235887)
chr2 (332-556)||(14535470-14535697)
chr2 (14-109)||(21627782-21627882)
chr2 (264-344)||(21628259-21628338)
chr2 (114-178)||(32791652-32791716)
chr2 (376-537)||(21628350-21628516)
chr2 (332-424)||(14530851-14530943)
chr2 (114-178)||(21627911-21627975)
chr2 (227-258)||(21628173-21628204)
chr2 (46-109)||(32791561-32791623)
[»] chr1 (2 HSPs)
chr1 (669-788)||(7391562-7391681)
chr1 (14-105)||(7389917-7390008)
[»] chr7 (4 HSPs)
chr7 (676-788)||(48298930-48299042)
chr7 (14-109)||(48300216-48300311)
chr7 (114-181)||(48300120-48300187)
chr7 (278-319)||(48299792-48299833)


Alignment Details
Target: scaffold0256 (Bit Score: 116; Significance: 1e-58; HSPs: 6)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 645 - 788
Target Start/End: Complemental strand, 11481 - 11338
Alignment:
Q  645 atttaacataacaattaactcttactttacttatctttcaggaaaggttggacagaagcatgcagattccatatcatatgcatataaatctcgagctcct 744  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||    
T  11481 atttaacataacaattaactctttatttacttatctttcaggaaaggttggaaagaagcatgcagatgccatatcatatgcatataaatctcgatctcct 11382  T
Q  745 agaagcagtgtatctagtatctgctatgctactggaagttccca 788  Q
    || | |||||||||||||||||||||||||||||||||||||||    
T  11381 aggatcagtgtatctagtatctgctatgctactggaagttccca 11338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 12287 - 12192
Alignment:
Q  14 ctgttgcttaagagtcatttgcaagaaaatgttcaccacatggacgatttaacatggatactttttaacagagctatgtcacaattaggtctatgt 109  Q
    |||||||| | ||||||||||||||||||||||||||||||||||| || ||||  ||||| ||||||||| ||||||||| | ||||| ||||||    
T  12287 ctgttgctcatgagtcatttgcaagaaaatgttcaccacatggacgtttcaacacagatacgttttaacagggctatgtcatagttaggcctatgt 12192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 14517 - 14422
Alignment:
Q  14 ctgttgcttaagagtcatttgcaagaaaatgttcaccacatggacgatttaacatggatactttttaacagagctatgtcacaattaggtctatgt 109  Q
    |||||||||| |||||||||| |||||||||| ||||||||||||| || ||||  ||||| || |||||| |||||||||||||||||| |||||    
T  14517 ctgttgcttatgagtcatttgaaagaaaatgtgcaccacatggacgtttcaacacagatacattctaacagggctatgtcacaattaggtgtatgt 14422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 12163 - 12099
Alignment:
Q  114 cacatgactgtctgtctcaactttattccggtggaaggttgaaagaactgctcgtacaaggagtt 178  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||| ||||| |||||||||||    
T  12163 cacatgactgtcagtctgaactttattccggtggaaggttgaaagaattgctcatacaaggagtt 12099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 253 - 331
Target Start/End: Complemental strand, 11875 - 11797
Alignment:
Q  253 cagttttgaatagaaatttgatttgattattggctgcatattgctctgttctctttgcttctgaattaattacatttga 331  Q
    |||||||||| ||||||||||||||| ||||  ||||||||||| ||||||||||| || |||||| ||||||||||||    
T  11875 cagttttgaacagaaatttgatttgaatattaactgcatattgccctgttctcttttctgctgaatcaattacatttga 11797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 258
Target Start/End: Complemental strand, 11937 - 11906
Alignment:
Q  227 tttaaaatcaatgttgatctgaattgcagttt 258  Q
    ||||||||||||||||||||||||||||||||    
T  11937 tttaaaatcaatgttgatctgaattgcagttt 11906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 3e-35; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 264 - 436
Target Start/End: Complemental strand, 16783826 - 16783655
Alignment:
Q  264 agaaatttgatttgattattggctgcatattgctctgttctctttgcttctgaattaattacatttgatatgaattacaatgcattggcattttgtcaat 363  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||  |||||||||||||||||| ||| |||||||| | ||||||||||||||||    
T  16783826 agaaatttgatttgattattgcctgcatattgctctgttatctttgctgttgaattaattacatttgaaatggattacaattc-ttggcattttgtcaat 16783728  T
Q  364 attctgtattcaatgtgaatacattatgtgttaaacaacgcacatgtttgaacaccttgttccctgttatatt 436  Q
     |||||||||  ||| || ||| ||||| | ||| || | | |||||||||| ||| ||||||| ||||||||    
T  16783727 gttctgtattttatgagagtacgttatgcgataagcatcactcatgtttgaataccatgttccccgttatatt 16783655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 645 - 784
Target Start/End: Original strand, 16874099 - 16874238
Alignment:
Q  645 atttaacataacaattaactcttactttacttatctttcaggaaaggttggacagaagcatgcagattccatatcatatgcatataaatctcgagctcct 744  Q
    ||||||| |||||||||||||||  ||| |||||||||| |||||||||||| ||||||   ||||| |||||||||||||| ||||||||  |||| ||    
T  16874099 atttaacgtaacaattaactctttattttcttatctttccggaaaggttggaaagaagccgacagatgccatatcatatgcacataaatctttagctact 16874198  T
Q  745 agaagcagtgtatctagtatctgctatgctactggaagtt 784  Q
     ||| ||||||||||| |||||| ||||||| ||||||||    
T  16874199 ggaatcagtgtatctaatatctgttatgctattggaagtt 16874238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 645 - 784
Target Start/End: Original strand, 16580239 - 16580378
Alignment:
Q  645 atttaacataacaattaactcttactttacttatctttcaggaaaggttggacagaagcatgcagattccatatcatatgcatataaatctcgagctcct 744  Q
    |||||||||||||||||||||||  |||||||||||||| |||||||||| |   ||||   ||||| |||||||||||||| ||||||||  |||| ||    
T  16580239 atttaacataacaattaactctttatttacttatctttccggaaaggttgaaatcaagccgacagatgccatatcatatgcacataaatctttagctact 16580338  T
Q  745 agaagcagtgtatctagtatctgctatgctactggaagtt 784  Q
     ||| ||||||||||| |||||| ||||||| ||||||||    
T  16580339 ggaatcagtgtatctaatatctgttatgctattggaagtt 16580378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 645 - 784
Target Start/End: Complemental strand, 16615141 - 16615002
Alignment:
Q  645 atttaacataacaattaactcttactttacttatctttcaggaaaggttggacagaagcatgcagattccatatcatatgcatataaatctcgagctcct 744  Q
    |||||||||||||||||||||||  |||||||||||||| |||||||||| |   ||||   ||||| |||||||||||||| ||||||||  |||| ||    
T  16615141 atttaacataacaattaactctttatttacttatctttccggaaaggttgaaatcaagccgacagatgccatatcatatgcacataaatctttagctact 16615042  T
Q  745 agaagcagtgtatctagtatctgctatgctactggaagtt 784  Q
     ||| ||||||||||| |||||| ||||||| ||||||||    
T  16615041 ggaatcagtgtatctaatatctgttatgctattggaagtt 16615002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 670 - 784
Target Start/End: Original strand, 16572278 - 16572392
Alignment:
Q  670 tttacttatctttcaggaaaggttggacagaagcatgcagattccatatcatatgcatataaatctcgagctcctagaagcagtgtatctagtatctgct 769  Q
    ||||||||||||||||||||||||||| ||||||   ||||| ||||||| |||||| ||||||||  |||| || ||| ||||||||||| |||||| |    
T  16572278 tttacttatctttcaggaaaggttggaaagaagccgacagatgccatatcgtatgcacataaatctttagctactggaatcagtgtatctaatatctgat 16572377  T
Q  770 atgctactggaagtt 784  Q
    |||||| ||||||||    
T  16572378 atgctattggaagtt 16572392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 16873432 - 16873527
Alignment:
Q  14 ctgttgcttaagagtcatttgcaagaaaatgttcaccacatggacgatttaacatggatactttttaacagagctatgtcacaattaggtctatgt 109  Q
    |||||||||| ||||||||| |||||||||| |||||||||||||| || ||||  ||||| ||||||||| ||||||||||| ||||| ||||||    
T  16873432 ctgttgcttacgagtcatttacaagaaaatggtcaccacatggacgtttcaacacagatacgttttaacagggctatgtcacagttaggcctatgt 16873527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 465 - 557
Target Start/End: Complemental strand, 16984111 - 16984025
Alignment:
Q  465 gatattgtctactgtcctagacactaacctgatagactaaattcttgatattgttaattgaaatttaatatcttgacgtgttactaatttttt 557  Q
    |||||||| |||||||||||||||||||||||| || ||| ||||||      ||||||| ||||||||||||||||||||| ||||||||||    
T  16984111 gatattgtttactgtcctagacactaacctgatcgagtaatttcttg------ttaattggaatttaatatcttgacgtgtttctaatttttt 16984025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 16873556 - 16873620
Alignment:
Q  114 cacatgactgtctgtctcaactttattccggtggaaggttgaaagaactgctcgtacaaggagtt 178  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||| |||| | ||||||||||    
T  16873556 cacatgactgtctgtctgaactttatttcggtggaaggttgaaagaattgcttgcacaaggagtt 16873620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 16571432 - 16571527
Alignment:
Q  14 ctgttgcttaagagtcatttgcaagaaaatgttcaccacatggacgatttaacatggatactttttaacagagctatgtcacaattaggtctatgt 109  Q
    ||||||| || || |||||||||||||| ||||||||||| ||||| || ||||  ||||| ||||||||| ||||||||||| ||||| ||||||    
T  16571432 ctgttgcgtatgaatcatttgcaagaaactgttcaccacaaggacgtttcaacacagatacattttaacagggctatgtcacagttaggcctatgt 16571527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 16571888 - 16571966
Alignment:
Q  253 cagttttgaatagaaatttgatttgattattggctgcatattgctctgttctctttgcttctgaattaattacatttga 331  Q
    |||||||||| |||||| |||||||| |||| | |||||||| |  |||||||||| || |||||||||||||||||||    
T  16571888 cagttttgaacagaaatctgatttgaatattagttgcatatttccttgttctcttttctgctgaattaattacatttga 16571966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 16571563 - 16571616
Alignment:
Q  125 ctgtctcaactttattccggtggaaggttgaaagaactgctcgtacaaggagtt 178  Q
    |||||| |||||||||| | |||||||||||||||| |||||| ||||||||||    
T  16571563 ctgtctgaactttattctgctggaaggttgaaagaattgctcgcacaaggagtt 16571616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 725 - 788
Target Start/End: Complemental strand, 16977695 - 16977632
Alignment:
Q  725 catataaatctcgagctcctagaagcagtgtatctagtatctgctatgctactggaagttccca 788  Q
    ||||||||||| |||||||| ||| |||||||| || ||||| |||||||| || |||||||||    
T  16977695 catataaatcttgagctcctggaatcagtgtatataatatcttctatgctaatgcaagttccca 16977632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 16832483 - 16832437
Alignment:
Q  249 attgcagttttgaatagaaatttgatttgattattggctgcatattg 295  Q
    ||||||||| |||| |||||||||||||||||||| | |||||||||    
T  16832483 attgcagttatgaacagaaatttgatttgattattagttgcatattg 16832437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 2e-30; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 644 - 788
Target Start/End: Original strand, 21628995 - 21629139
Alignment:
Q  644 catttaacataacaattaactcttactttacttatctttcaggaaaggttggacagaagcatgcagattccatatcatatgcatataaatctcgagctcc 743  Q
    |||||||||| |||||||||||||  ||| ||||| |||||||||  |||||| ||||||  || ||| ||||||||||||||||||||||| |||||||    
T  21628995 catttaacatcacaattaactctttttttccttatatttcaggaattgttggaaagaagccggctgatgccatatcatatgcatataaatcttgagctcc 21629094  T
Q  744 tagaagcagtgtatctagtatctgctatgctactggaagttccca 788  Q
    | ||| ||||||||||  ||||||||||| || ||||||||||||    
T  21629095 ttgaatcagtgtatctcatatctgctatggtattggaagttccca 21629139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 264 - 537
Target Start/End: Original strand, 32791984 - 32792251
Alignment:
Q  264 agaaatttgatttgattattggctgcatattgctctgttctctttgcttctgaattaattacatttgatatgaattacaatgcattggcattttgtcaat 363  Q
    |||| |||||||||||||||| ||||| | |||||  |||||||| ||  ||||||||||||| |||||||| |||||||| | ||||||||||||||||    
T  32791984 agaattttgatttgattattgcctgca-actgctccattctctttactgttgaattaattacacttgatatggattacaattc-ttggcattttgtcaat 32792081  T
Q  364 attctgtattcaatgtgaatacattatgtgttaaacaacgcacatgtttgaacaccttgttccctgttata--ttgtgttaatattttacttaacttcgt 461  Q
     || ||||||  |||||| |||| |||| |||||||| | |||||| ||||||||| ||||||   |||||  ||||| | |||||||| |||||| | |    
T  32792082 gttatgtattttatgtgagtacaatatgcgttaaacatcacacatgcttgaacaccgtgttccgcattatattttgtgatgatattttaattaactgctt 32792181  T
Q  462 ttggatattgtctactgtcctagacactaacctgatagactaaattcttgatattgttaattgaaatttaatatct 537  Q
    || ||||||||||  |||| | ||||| |     ||| | ||| ||||||||||||||||||||||||| ||||||    
T  32792182 ttagatattgtctcttgtcttggacacga-----ata-agtaatttcttgatattgttaattgaaatttcatatct 32792251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 669 - 786
Target Start/End: Complemental strand, 233933 - 233816
Alignment:
Q  669 ctttacttatctttcaggaaaggttggacagaagcatgcagattccatatcatatgcatataaatctcgagctcctagaagcagtgtatctagtatctgc 768  Q
    ||||| |||||||||||||||||||||| |||||   |||||| ||||||||||||||||||||||| |||||||| ||| ||||| ||||   ||||||    
T  233933 ctttaattatctttcaggaaaggttggaaagaagacggcagatgccatatcatatgcatataaatcttgagctcctggaatcagtgcatcttacatctgc 233834  T
Q  769 tatgctactggaagttcc 786  Q
    |||||| |||||||||||    
T  233833 tatgctgctggaagttcc 233816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 235887 - 235793
Alignment:
Q  15 tgttgcttaagagtcatttgcaagaaaatgttcaccacatggacgatttaacatggatactttttaacagagctatgtcacaattaggtctatgt 109  Q
    ||||||||| ||||||||||||||||||||||||||||||||||  ||  |||   |||||||||||||| ||||||||||| ||||||||||||    
T  235887 tgttgcttatgagtcatttgcaagaaaatgttcaccacatggacatttcgacacaaatactttttaacagggctatgtcacagttaggtctatgt 235793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 332 - 556
Target Start/End: Original strand, 14535470 - 14535697
Alignment:
Q  332 tatgaattacaatgcattggcattttgtcaatattctgtattcaatgtgaatacattatgtgttaaacaacgcacatgtttgaacaccttgttccctgtt 431  Q
    |||| |||| ||||||||| |||||||||| | |||||||||  ||| |  ||||||||||||| |||  | |||| | |||||||||||||||| || |    
T  14535470 tatggattaaaatgcattgacattttgtcagtgttctgtattttatgag--tacattatgtgtttaacgccacacaggcttgaacaccttgttccttggt 14535567  T
Q  432 atattgtgt--taatattttacttaacttcgtttggatattgtctactgtcctagacactaa---cctgatagactaaattcttgatattgttaattgaa 526  Q
     |||| |||  | |||||||||| |||| | || |||||||||||  |||| |||||||| |   |||| |||| ||| ||||||||| ||||||||| |    
T  14535568 gtattttgtggtgatattttactcaactactttcggatattgtctcttgtcatagacacttatagcctggtagagtaatttcttgataatgttaattgga 14535667  T
Q  527 atttaatatcttgacgtgttactaattttt 556  Q
    | ||||||| ||| ||||||||||||||||    
T  14535668 acttaatattttggcgtgttactaattttt 14535697  T

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Target: chr2; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 21627782 - 21627882
Alignment:
Q  14 ctgttgcttaagagtcatttgcaagaaaatgttcaccacatggacgatttaacatggatact-----ttttaacagagctatgtcacaattaggtctatg 108  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| || ||||  ||||||     ||||||||| ||||||||||| |||||||||||    
T  21627782 ctgttgcttatgagtcatttgcaagaaaatgttcaccacatggacgtttcaacacagatactttttattttaacagggctatgtcacagttaggtctatg 21627881  T
Q  109 t 109  Q
    |    
T  21627882 t 21627882  T

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Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 264 - 344
Target Start/End: Original strand, 21628259 - 21628338
Alignment:
Q  264 agaaatttgatttgattattggctgcatattgctctgttctctttgcttctgaattaattacatttgatatgaattacaat 344  Q
    ||||||||||||||||||||| ||||| | ||||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  21628259 agaaatttgatttgattattgcctgca-actgctccgttctctttgctgttgaattaattacatttgatatggattacaat 21628338  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 32791652 - 32791716
Alignment:
Q  114 cacatgactgtctgtctcaactttattccggtggaaggttgaaagaactgctcgtacaaggagtt 178  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||||| |||||| ||||||||||    
T  32791652 cacatgactgtctgtctgaactttatcccggtggaagggtgaaagaattgctcgcacaaggagtt 32791716  T

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Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 376 - 537
Target Start/End: Original strand, 21628350 - 21628516
Alignment:
Q  376 atgtgaatacattatgtgttaaacaacgcacatgtttgaacaccttgttccctgttatattgtgtta--atattttacttaacttcgtttggatattgtc 473  Q
    |||||| |||||||||  ||||||| | |||||| ||||||||  |||||||  ||||||| ||| |  |||| |||||||||| | ||||||||| |||    
T  21628350 atgtgagtacattatgcattaaacatcacacatgcttgaacacggtgttccccattatattttgtgatgatatattacttaactgcttttggatatcgtc 21628449  T
Q  474 tactgtcctagacactaa---cctgatagactaaattcttgatattgttaattgaaatttaatatct 537  Q
    |  |||| ||||||||||   | ||||||| ||| || |||||||||||||||| ||||| ||||||    
T  21628450 tcttgtcttagacactaatatcttgatagagtaatttgttgatattgttaattggaatttcatatct 21628516  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 332 - 424
Target Start/End: Original strand, 14530851 - 14530943
Alignment:
Q  332 tatgaattacaatgcattggcattttgtcaatattctgtattcaatgtgaatacattatgtgttaaacaacgcacatgtttgaacaccttgtt 424  Q
    |||| |||| ||| |||||||||||||||||| |||||||||  |||||| |||||||||||||  ||| | |||||| |||| |||||||||    
T  14530851 tatggattaaaatacattggcattttgtcaatgttctgtattttatgtgagtacattatgtgtttgacaccacacatgcttgagcaccttgtt 14530943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 21627911 - 21627975
Alignment:
Q  114 cacatgactgtctgtctcaactttattccggtggaaggttgaaagaactgctcgtacaaggagtt 178  Q
    ||||||| ||||||||| |||||||| ||||||||||| ||| |||| |||||| ||||||||||    
T  21627911 cacatgaatgtctgtctgaactttatcccggtggaagggtgagagaattgctcgcacaaggagtt 21627975  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 258
Target Start/End: Original strand, 21628173 - 21628204
Alignment:
Q  227 tttaaaatcaatgttgatctgaattgcagttt 258  Q
    ||||||||||||||||||||||||||||||||    
T  21628173 tttaaaatcaatgttgatctgaattgcagttt 21628204  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 32791561 - 32791623
Alignment:
Q  46 tcaccacatggacgatttaacatggatactttttaacagagctatgtcacaattaggtctatgt 109  Q
    |||||||||||||| || ||||  ||||||||||||||| ||||||||||  ||||||||||||    
T  32791561 tcaccacatggacgtttcaacacagatactttttaacagggctatgtcac-gttaggtctatgt 32791623  T

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Target: chr1 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 669 - 788
Target Start/End: Original strand, 7391562 - 7391681
Alignment:
Q  669 ctttacttatctttcaggaaaggttggacagaagcatgcagattccatatcatatgcatataaatctcgagctcctagaagcagtgtatctagtatctgc 768  Q
    ||||| |||||||||||||||||||||| |||||   |||||| ||||||||||||||||||||||| |||||||| ||| ||||| ||||   ||||||    
T  7391562 ctttaattatctttcaggaaaggttggaaagaagacggcagatgccatatcatatgcatataaatcttgagctcctggaatcagtgcatcttacatctgc 7391661  T
Q  769 tatgctactggaagttccca 788  Q
    |||||| |||||||||||||    
T  7391662 tatgctgctggaagttccca 7391681  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 7389917 - 7390008
Alignment:
Q  14 ctgttgcttaagagtcatttgcaagaaaatgttcaccacatggacgatttaacatggatactttttaacagagctatgtcacaattaggtct 105  Q
    |||||||||| ||||||||||||||||||||||||||||||||||  ||  |||   |||||||||||||| ||||||||||| ||||||||    
T  7389917 ctgttgcttatgagtcatttgcaagaaaatgttcaccacatggacatttcgacacaaatactttttaacagggctatgtcacagttaggtct 7390008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 1e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 676 - 788
Target Start/End: Complemental strand, 48299042 - 48298930
Alignment:
Q  676 tatctttcaggaaaggttggacagaagcatgcagattccatatcatatgcatataaatctcgagctcctagaagcagtgtatctagtatctgctatgcta 775  Q
    ||||||||||||||||||||| |||||   |||||| ||||||||||||||||||||||| |||||||| ||| ||||| ||||   ||||||||||||     
T  48299042 tatctttcaggaaaggttggaaagaagacggcagatgccatatcatatgcatataaatcttgagctcctggaatcagtgcatcttacatctgctatgctg 48298943  T
Q  776 ctggaagttccca 788  Q
    |||||||||||||    
T  48298942 ctggaagttccca 48298930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 48300311 - 48300216
Alignment:
Q  14 ctgttgcttaagagtcatttgcaagaaaatgttcaccacatggacgatttaacatggatactttttaacagagctatgtcacaattaggtctatgt 109  Q
    |||||||||| ||||||||||||||||||||||||||||||||||  ||  |||  |||||| |||||||| ||||||||||| ||||||||||||    
T  48300311 ctgttgcttatgagtcatttgcaagaaaatgttcaccacatggacatttcgacacagatactctttaacagggctatgtcacagttaggtctatgt 48300216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 48300187 - 48300120
Alignment:
Q  114 cacatgactgtctgtctcaactttattccggtggaaggttgaaagaactgctcgtacaaggagtttca 181  Q
    |||||| |||| ||||| |||||||||| |||||| || ||||||||||||| | |||||||||||||    
T  48300187 cacatggctgtttgtctgaactttattctggtggacgggtgaaagaactgcttgcacaaggagtttca 48300120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 48299833 - 48299792
Alignment:
Q  278 attattggctgcatattgctctgttctctttgcttctgaatt 319  Q
    |||||||||||||||||||||||||||||||| | |||||||    
T  48299833 attattggctgcatattgctctgttctctttgttgctgaatt 48299792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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