View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_11 (Length: 483)
Name: NF0529_low_11
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 31692493 - 31692125
Alignment:
| Q |
1 |
ttttgtgcaatctctttgttcatcatctttcgatcaattcctatttcgtttttctgtttgtgattaagttttcatcgcaatttcattccatcctttccca |
100 |
Q |
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| T |
31692493 |
ttttgtgcaatctctttgttcatcatctttcgatcaattcctatttcgtttttctgtttgtgatcaagttttcatcgcaatttcattccatcctttccca |
31692394 |
T |
|
| Q |
101 |
aattctagggtttgttattcaaaattcaattgtatttcagtttcttaagctactacatcttgcggttctattacgcaaatttgtttgtga---------- |
190 |
Q |
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| T |
31692393 |
aattctagggtttgttattcaaaattcaattgtatttcagtttcttaagccactacatcttgcggttctatttcgcaaatttgtttgtgattccgcttct |
31692294 |
T |
|
| Q |
191 |
------ttccttcatgttattctccttgttcgatcaaccttttagtttgcgatttcatcgcgaatattatgatgaacactttatactcgtccaaattcat |
284 |
Q |
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| T |
31692293 |
atttgtttccttcatgttatcctccttgttcgatcaacctttcagtttgcgatttcatcgggaatattatgatgaacactttatacttgtccaaattcat |
31692194 |
T |
|
| Q |
285 |
gttgatgacattatttttgtgcaatcaacaaatctatgttcacgattttacaaagttaatgcaaacaaa |
353 |
Q |
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| T |
31692193 |
gttgatgacattatttttgtccaatcaacaaatctatgttcacgattttacaaagttaatgcaaacaaa |
31692125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 382 - 474
Target Start/End: Complemental strand, 31692126 - 31692034
Alignment:
| Q |
382 |
aagttcttcctaagataattcaaatgttgcatcgtttacccgagtaaatatgctcatgtttataactctatttcatctaccaactattcatct |
474 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31692126 |
aagttcttcctaagataattcaaatgttgcatcgtttacccgagtaaatatgctcatgtttataactctatttcatctaccaactattcatct |
31692034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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