View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_12 (Length: 466)
Name: NF0529_low_12
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 29 - 456
Target Start/End: Original strand, 26755055 - 26755482
Alignment:
| Q |
29 |
aaatacaagtccttatcagacggtcctcatcgcgatatatttgaaacttcgctagatgacattcttagcaaccattatgtggacattatggttgaaaaat |
128 |
Q |
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| T |
26755055 |
aaatacaagtccttatcagagggtcctcatcgcaatatatttgaaacgtcgctagatgacattcttagcaaccattatgtggacattatggttgaaaaat |
26755154 |
T |
|
| Q |
129 |
cactgcaaggtaacaaggagaaaaatacatcttttgatgcacaacctcgggtccaggaaagcacaaatagaagcatacaaactgactacctgtccaacga |
228 |
Q |
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| T |
26755155 |
cactgcaaggtaacaaggaaaaaaatacatcttttgatgcacaacctcgggtccaggaaagcacaaatagaagcatacaaactgactacctgtccaacga |
26755254 |
T |
|
| Q |
229 |
cacagatcatgagtatgaccaatcttatttggaagaggaaaaatttcagtgtttgacaaacacagaagataatgatagagaaaatgaaaaacatgtggaa |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26755255 |
cacagatcatgagtatgaccaatcttatttggaagaggaaaaatttcagtgtttgacaaacacagaagataatgatagagaaaatgaaaaacatgtggaa |
26755354 |
T |
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| Q |
329 |
aatgaggctggttgggcctcaatgatacttaatggagatacaattgacaatagtgatggtcacgagatctgtgaaacctgcaagattgaagagagccgtg |
428 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26755355 |
aatgaggctggttgtgcctcaatgatacttaatggagatacaattgacaatagtgatggtcacgggatctgtgaaacctgcaagattgaagagagccgtg |
26755454 |
T |
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| Q |
429 |
aagatagcaacacaaacctagagaataa |
456 |
Q |
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| T |
26755455 |
aagatagcaacacaaacctagagaataa |
26755482 |
T |
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