View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_14 (Length: 458)
Name: NF0529_low_14
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 7108719 - 7108253
Alignment:
| Q |
1 |
tgttttgccaaagaggtggtgagcagaagtatttctagattggtggatgaaggtaagctagaccttatcaaggggtccagaaaaccata----------- |
89 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7108719 |
tgttttgccaaagaggtgatgagcagaggtatttctagattggtggatgaaggtaagctagaccttatcaaggggtccagaaaaccatatgtccagaaaa |
7108620 |
T |
|
| Q |
90 |
-----gtaatctcattgattcaaggaatactgatacacaatttgttcttatatggtttgccattttcattgttaaaagatttggagagaagcattaggaa |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7108619 |
ccatagtaatctcattgattcaaggaatactgatacacaatttgtccttatatgctttgctattttcattgttaaaagatttggagagaagcattaggaa |
7108520 |
T |
|
| Q |
185 |
cttcatttggagtggggacattgagaagaggaaattagtcattgtggcatggaaaaaatttgtaagccattagaggagggagggttaggtattagatatc |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7108519 |
cttcatttggagtggggacattgagaagaggaaattagtcattgtggcatgaaaaaaatttgtaagccattagaggaaggagggttaggtattagatatc |
7108420 |
T |
|
| Q |
285 |
taatccatcttaatgaagcttataatcttaagctttgttgagagaatggcgtcttctgatacggatcgggcaaagatgttaaggtctagagttttaaaaa |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7108419 |
taatccatcttaatgaagcttataatcttaagctttgttgggagaatggcgtcttctgatacggattgggcaaagatgttaaggtctagagttttaaaaa |
7108320 |
T |
|
| Q |
385 |
acgatagatgtatttcttatcatattttctcctctttatcgagtagttttaaaagtgagtataatct |
451 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7108319 |
atgatagatgtatttcttatcatattttctcctctttatcgagtagttttaaaagtgagtataatct |
7108253 |
T |
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