View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0529_low_17 (Length: 438)

Name: NF0529_low_17
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0529_low_17
NF0529_low_17
[»] chr7 (12 HSPs)
chr7 (1-232)||(1373955-1374200)
chr7 (1-86)||(1350657-1350742)
chr7 (1-86)||(1384311-1384396)
chr7 (1-86)||(1390416-1390501)
chr7 (316-428)||(1394499-1394611)
chr7 (319-428)||(1350494-1350603)
chr7 (1-86)||(1358563-1358648)
chr7 (319-428)||(1384148-1384257)
chr7 (319-428)||(1390253-1390362)
chr7 (1-86)||(1394662-1394747)
chr7 (316-428)||(1358400-1358512)
chr7 (343-428)||(1373787-1373872)
[»] chr6 (4 HSPs)
chr6 (1-77)||(7007237-7007313)
chr6 (1-77)||(7010315-7010391)
chr6 (363-424)||(7009807-7009868)
chr6 (363-421)||(7006716-7006774)


Alignment Details
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 1374200 - 1373955
Alignment:
Q  1 caacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttctgca--------agtagaaatcaa 92  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        ||||||| ||||    
T  1374200 caacttccacattgtccagtaacgtccgtcatagtatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtaagcaagtagaagtcaa 1374101  T
Q  93 aac------atgttaaccatcataactcaaaagggttttaaataagtgtttgtgaccttgatcagggtcgcgacataatggtttttgatgttattgaaac 186  Q
    |||      ||||||||||||| |||||||| || ||||||||||  ||  ||||||  ||||||||||||||||||| |||||||||||||||||||||    
T  1374100 aacaaacatatgttaaccatcaaaactcaaatggattttaaataaaggtccgtgaccacgatcagggtcgcgacataacggtttttgatgttattgaaac 1374001  T
Q  187 cacagttcgaccgaaattgaggccacatcggccgcaaacaagttaa 232  Q
    | ||||||||| | ||||||||||||||||||| || |||| ||||    
T  1374000 cgcagttcgacagcaattgaggccacatcggccacacacaaattaa 1373955  T

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Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 1350742 - 1350657
Alignment:
Q  1 caacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtaga 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1350742 caacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtaga 1350657  T

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Target: chr7; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 1384396 - 1384311
Alignment:
Q  1 caacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtaga 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1384396 caacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtaga 1384311  T

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Target: chr7; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 1390501 - 1390416
Alignment:
Q  1 caacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtaga 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390501 caacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtaga 1390416  T

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Target: chr7; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 316 - 428
Target Start/End: Complemental strand, 1394611 - 1394499
Alignment:
Q  316 tcattgaaaagaaattgaaagtaaataaataatagacctcggtctcgaattccaagcaagcaacccatcccttccttataagatattcaacttctttcgc 415  Q
    |||||||||||  ||||||| ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1394611 tcattgaaaaggcattgaaaataaattaaaactagacctcggtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgc 1394512  T
Q  416 caattgttctctg 428  Q
    |||||||||||||    
T  1394511 caattgttctctg 1394499  T

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Target: chr7; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 319 - 428
Target Start/End: Complemental strand, 1350603 - 1350494
Alignment:
Q  319 ttgaaaagaaattgaaagtaaataaataatagacctcggtctcgaattccaagcaagcaacccatcccttccttataagatattcaacttctttcgccaa 418  Q
    ||||||||  ||||||| ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1350603 ttgaaaaggcattgaaaataaattaaaactagacctcggtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaa 1350504  T
Q  419 ttgttctctg 428  Q
    ||||||||||    
T  1350503 ttgttctctg 1350494  T

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Target: chr7; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 1358648 - 1358563
Alignment:
Q  1 caacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtaga 86  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1358648 caacttccacattgtccagtaacgtccgtcatagtatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtaga 1358563  T

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Target: chr7; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 319 - 428
Target Start/End: Complemental strand, 1384257 - 1384148
Alignment:
Q  319 ttgaaaagaaattgaaagtaaataaataatagacctcggtctcgaattccaagcaagcaacccatcccttccttataagatattcaacttctttcgccaa 418  Q
    ||||||||  ||||||| ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1384257 ttgaaaaggcattgaaaataaattaaaactagacctcggtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaa 1384158  T
Q  419 ttgttctctg 428  Q
    ||||||||||    
T  1384157 ttgttctctg 1384148  T

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Target: chr7; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 319 - 428
Target Start/End: Complemental strand, 1390362 - 1390253
Alignment:
Q  319 ttgaaaagaaattgaaagtaaataaataatagacctcggtctcgaattccaagcaagcaacccatcccttccttataagatattcaacttctttcgccaa 418  Q
    ||||||||  ||||||| ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1390362 ttgaaaaggcattgaaaataaattaaaactagacctcggtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaa 1390263  T
Q  419 ttgttctctg 428  Q
    ||||||||||    
T  1390262 ttgttctctg 1390253  T

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Target: chr7; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 1394747 - 1394662
Alignment:
Q  1 caacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtaga 86  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1394747 caacttccacattgtccagtaacgtccgtcatagtatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtaga 1394662  T

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Target: chr7; HSP #11
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 316 - 428
Target Start/End: Complemental strand, 1358512 - 1358400
Alignment:
Q  316 tcattgaaaagaaattgaaagtaaataaataatagacctcggtctcgaattccaagcaagcaacccatcccttccttataagatattcaacttctttcgc 415  Q
    |||||||||||  ||||||| ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  1358512 tcattgaaaaggcattgaaaataaattaaaactagacctcggtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttggc 1358413  T
Q  416 caattgttctctg 428  Q
    |||||||||||||    
T  1358412 caattgttctctg 1358400  T

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Target: chr7; HSP #12
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 343 - 428
Target Start/End: Complemental strand, 1373872 - 1373787
Alignment:
Q  343 aataatagacctcggtctcgaattccaagcaagcaacccatcccttccttataagatattcaacttctttcgccaattgttctctg 428  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1373872 aatattagacctcggtctcaaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg 1373787  T

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Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7007313 - 7007237
Alignment:
Q  1 caacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttct 77  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  7007313 caacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttct 7007237  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7010391 - 7010315
Alignment:
Q  1 caacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttct 77  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  7010391 caacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttct 7010315  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 424
Target Start/End: Complemental strand, 7009868 - 7009807
Alignment:
Q  363 aattccaagcaagcaacccatcccttccttataagatattcaacttctttcgccaattgttc 424  Q
    |||||||| |||| ||||||||||||||| ||||| ||||| ||||| || |||||||||||    
T  7009868 aattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttc 7009807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 421
Target Start/End: Complemental strand, 7006774 - 7006716
Alignment:
Q  363 aattccaagcaagcaacccatcccttccttataagatattcaacttctttcgccaattg 421  Q
    |||||||| |||| ||||||||||||||| ||||| ||||| ||||| || ||||||||    
T  7006774 aattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattg 7006716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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