View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0529_low_19 (Length: 432)
Name: NF0529_low_19
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 30 - 420
Target Start/End: Original strand, 39564158 - 39564548
Alignment:
| Q |
30 |
acaggtacatgaatgcagtgtgattaaagtggctgattcatgtcaaaatttcaagtaattgagaaactaacctttctggtttcagcattgatgtctgggg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39564158 |
acaggtacatgaatgcagtgtgattaaagtggctgattcatgtcaaaatttcaagtaattgagaaactaacctttctagtttcagcattgatgtctgggg |
39564257 |
T |
|
| Q |
130 |
acaaccggagccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggt |
229 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39564258 |
acaaccggagccatgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggt |
39564357 |
T |
|
| Q |
230 |
ttcttgcttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagca |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39564358 |
ttcttgcttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagca |
39564457 |
T |
|
| Q |
330 |
ccggtcacacccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaagaaccaacttatcctcaacaacaccta |
420 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39564458 |
ccggtcacacccattagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaagaaccaacttatcctcaacaacaccta |
39564548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 74 - 419
Target Start/End: Original strand, 39547423 - 39547768
Alignment:
| Q |
74 |
aaaatttcaagtaattgagaaactaacctttctggtttcagcattgatgtctggggacaaccggagccacgctgaatagagcaaagattcatagacagta |
173 |
Q |
| |
|
||||| |||||| ||| | | |||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39547423 |
aaaatctcaagtgattaaaatactaacctttctggtttcagcattgatgtcaggggacaatcggagccatgctgaatagagcaaagattcatagacagta |
39547522 |
T |
|
| Q |
174 |
acataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtgatgttcccaccaa |
273 |
Q |
| |
|
|||| |||||| ||||||||| ||||||||||||| || ||||||||||||||||| ||||||||||||||| |||| || ||||||||||||||||||| |
|
|
| T |
39547523 |
acatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtatcttgcttctttggatagccagatattgtgatgttcccaccaa |
39547622 |
T |
|
| Q |
274 |
tatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagcagtgagaacaccaggtctgaaagc |
373 |
Q |
| |
|
||||||| || ||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39547623 |
tatatccaccagtttttctaccagaaagtacatccatcagagttgttttgcctgcaccagtcacacccatcagagcagtgagaacaccaggtctgaaagc |
39547722 |
T |
|
| Q |
374 |
tccacttacacccttcaaaagaaccaacttatcctcaacaacacct |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39547723 |
tccacttacacccttcaaaagaaccaacttatcctcaacaacacct |
39547768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 74 - 419
Target Start/End: Complemental strand, 39338898 - 39338553
Alignment:
| Q |
74 |
aaaatttcaagtaattgagaaactaacctttctggtttcagcattgatgtctggggacaaccggagccacgctgaatagagcaaagattcatagacagta |
173 |
Q |
| |
|
||||| |||||| ||| | | |||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39338898 |
aaaatctcaagtgattaaaatactaacctttctggtttcagcattgatgtcaggggacaatcggagccatgctgaatagagcaaagattcatagacagta |
39338799 |
T |
|
| Q |
174 |
acataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtgatgttcccaccaa |
273 |
Q |
| |
|
|||| |||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39338798 |
acatgaggagaatggatatcagtttgctcacagtatccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattttgatgttcccaccaa |
39338699 |
T |
|
| Q |
274 |
tatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagcagtgagaacaccaggtctgaaagc |
373 |
Q |
| |
|
||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
39338698 |
tatatccaccagtttttctaccagaaagcacatccatcagagttgttttcccagcaccggtgatgcccatcagagcggtgagaacacctggtctgaaagc |
39338599 |
T |
|
| Q |
374 |
tccacttacacccttcaaaagaaccaacttatcctcaacaacacct |
419 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
39338598 |
tccacttacacccttcaaaagaactaacttatcctcaagaacacct |
39338553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 96 - 419
Target Start/End: Complemental strand, 39366229 - 39365906
Alignment:
| Q |
96 |
ctaacctttctggtttcagcattgatgtctggggacaaccggagccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
39366229 |
ctaacctttctggtttcagcattgatgtcaggggacaatcggagccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcag |
39366130 |
T |
|
| Q |
196 |
tttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctacc |
295 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
39366129 |
tttgctcgcagtatccagaaattcttgcaaaggtttcttgcttctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctacc |
39366030 |
T |
|
| Q |
296 |
agaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaaga |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||| |||| |
|
|
| T |
39366029 |
agaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagccgtgagaacacctggtctgaaagctccactaagacccttcagaaga |
39365930 |
T |
|
| Q |
396 |
accaacttatcctcaacaacacct |
419 |
Q |
| |
|
|| ||||||||||||| ||||||| |
|
|
| T |
39365929 |
actaacttatcctcaataacacct |
39365906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 95 - 411
Target Start/End: Complemental strand, 39353720 - 39353404
Alignment:
| Q |
95 |
actaacctttctggtttcagcattgatgtctggggacaaccggagccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatca |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39353720 |
actaacctttctggtttcagcattgatgtctggggacaaccggagccatgttggatagagcaaagattcatagacagtaacataaggagaatggatatca |
39353621 |
T |
|
| Q |
195 |
ttttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctac |
294 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
39353620 |
gtttgctcacagtatccagaaattcttgcaaaggtttcttgcttttttggatagccggaaattgtgatgttcccaccaatatatccaccggtttttctac |
39353521 |
T |
|
| Q |
295 |
cagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaag |
394 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| || | ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
39353520 |
cagaaagcacatccattagagttgtttttccagcaccagtgatgcccatcagagccgtgagaacacctggtctgaaagctccacttacaccctttaaaag |
39353421 |
T |
|
| Q |
395 |
aaccaacttatcctcaa |
411 |
Q |
| |
|
||| |||||||| |||| |
|
|
| T |
39353420 |
aactaacttatcttcaa |
39353404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 95 - 419
Target Start/End: Original strand, 39537986 - 39538310
Alignment:
| Q |
95 |
actaacctttctggtttcagcattgatgtctggggacaaccggagccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatca |
194 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39537986 |
actaaccttcctggtttcagcattgatgtctggagacaaccggagccatgctgaatagagcaaagattcatagacagtaacataaggagaatggatatca |
39538085 |
T |
|
| Q |
195 |
ttttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctac |
294 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| || ||||| |||| |
|
|
| T |
39538086 |
gtttgctcacagtatcctgaaattcttgcaaaggtatcttgcttctttggatagccagaaattgtgatgttcccaccaatatatccaccagtttttctac |
39538185 |
T |
|
| Q |
295 |
cagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaag |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||| ||||||||||||||||| | ||| |||||||| |
|
|
| T |
39538186 |
cagaaagcacatccatcagagttgttttgcctgcacccgtgacgcccatcagagcagtgagaacacctggtctgaaagctccactgagacctttcaaaag |
39538285 |
T |
|
| Q |
395 |
aaccaacttatcctcaacaacacct |
419 |
Q |
| |
|
||||||| ||| ||||||||||||| |
|
|
| T |
39538286 |
aaccaacatattctcaacaacacct |
39538310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 138 - 410
Target Start/End: Original strand, 39589315 - 39589587
Alignment:
| Q |
138 |
agccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgct |
237 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
39589315 |
agccatgctgaatagagcaaagattcatatacagtaacatgaggagagtggatatcattttgctcacagtatccagaaattcttgcaaatgtttcttgct |
39589414 |
T |
|
| Q |
238 |
tctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcac |
337 |
Q |
| |
|
|||| ||| | || |||||||||||| |||||||||||||||| || ||||| ||||||||||||||||||| || ||| ||||| |||||||| || || |
|
|
| T |
39589415 |
tcttaggatatccagaaattgtgatggtcccaccaatatatccaccagtttttctaccagaaagcacatccaacaaagtagtttttccagcacccgtgac |
39589514 |
T |
|
| Q |
338 |
acccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaagaaccaacttatcctca |
410 |
Q |
| |
|
||||| | |||||||||||||||||| || ||| |||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
39589515 |
gcccattaaagcagtgagaacaccaggcctaaaaattccactgacacctttcaaaagaaccaacttatcctca |
39589587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 131 - 411
Target Start/End: Original strand, 39575070 - 39575350
Alignment:
| Q |
131 |
caaccggagccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtt |
230 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| |||| || ||||||||| |||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
39575070 |
caaccggagccatgctgaatagagcaaagactcatagaccgtaatatgaggagagtgtatatcattttgctcacagtatccggaaattcttgcaaaggtt |
39575169 |
T |
|
| Q |
231 |
tcttgcttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcac |
330 |
Q |
| |
|
|||||||| || ||| ||||||| |||||||||||||| ||||||||| || |||||||||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
39575170 |
tcttgctttttgggatgcccggaaactgtgatgttcccactaatatatcccccacttttcctaccagcaagtacatccatcaaagttgttttgccagcac |
39575269 |
T |
|
| Q |
331 |
cggtcacacccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaagaaccaacttatcctcaa |
411 |
Q |
| |
|
| || |||||||| || |||||||||||||| || || |||||||| || ||||| |||||||||||||||||||| |||| |
|
|
| T |
39575270 |
cagtgacacccataagtgcagtgagaacacctggcctaaaagctccgctgacaccgttcaaaagaaccaacttatcttcaa |
39575350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 98 - 391
Target Start/End: Original strand, 39622043 - 39622336
Alignment:
| Q |
98 |
aacctttctggtttcagcattgatgtctggggacaaccggagccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattt |
197 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||| |||||||| || ||| ||||||| |||||||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
39622043 |
aaccttcctggtttcagcattgatttctgcagacaatcggagccatgccgaaaagagcaatgattcatatacagtaacataaggagaatggatataattt |
39622142 |
T |
|
| Q |
198 |
tgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctaccag |
297 |
Q |
| |
|
|| |||||||| ||| ||| ||||||||||||||| |||||||||| | |||| |||||||||||| |||||||||||||||||| |||||| || |||| |
|
|
| T |
39622143 |
tgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatcctctggtttttcttccag |
39622242 |
T |
|
| Q |
298 |
aaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaa |
391 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | |||||||| | ||||| ||||| ||||| |
|
|
| T |
39622243 |
ctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaatgaaccactgacaccattcaa |
39622336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 96 - 327
Target Start/End: Original strand, 1084781 - 1085013
Alignment:
| Q |
96 |
ctaacctttctggtttcagcattgatgtctggggacaaccggagccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcat |
195 |
Q |
| |
|
|||||||| |||||||||||||| ||||| | || ||| |||||||| ||||||||||||||||| || |||||||||| || |||||| |||||||| |
|
|
| T |
1084781 |
ctaaccttcctggtttcagcattaatgtccgaggtcaatcggagccatgctgaatagagcaaagactcgtagacagtaaaatgaggagaatggatatcta |
1084880 |
T |
|
| Q |
196 |
tttgctcacagtacccagaaattcttgcaaaggtttcttgc--ttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttccta |
293 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| ||||||||| |||| |||| |||| |||||| |||||||||||||||||||||| | ||||| ||| |
|
|
| T |
1084881 |
tttgctcacagtatccagaaattcttgtaaatgtttcttgcttttctatggatagccagaaattatgatgttcccaccaatatatccatcagtttttcta |
1084980 |
T |
|
| Q |
294 |
ccagaaagcacatccatcagagttgttttgccag |
327 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| |
|
|
| T |
1084981 |
ccag-aagcacatccatcaaagttgttttgccag |
1085013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 42133041 - 42133090
Alignment:
| Q |
156 |
aaagattcatagacagtaacataaggagagtggatatcattttgctcaca |
205 |
Q |
| |
|
||||||||||||||||| ||||| ||||| || ||||||||||||||||| |
|
|
| T |
42133041 |
aaagattcatagacagttacatagggagaatgaatatcattttgctcaca |
42133090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 330
Target Start/End: Original strand, 1085062 - 1085123
Alignment:
| Q |
268 |
caccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcac |
330 |
Q |
| |
|
||||||| ||||| | ||||| ||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
1085062 |
caccaatgtatccatcagtttttctaccagaa-gcacatccatcaaagttgttttgccagcac |
1085123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 9e-43; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 138 - 394
Target Start/End: Original strand, 44223164 - 44223420
Alignment:
| Q |
138 |
agccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgct |
237 |
Q |
| |
|
|||||||| ||||| |||||||| ||||| || ||||||| || || ||||||||||| ||||||||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
44223164 |
agccacgccgaataaagcaaagactcataaactgtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgct |
44223263 |
T |
|
| Q |
238 |
tctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcac |
337 |
Q |
| |
|
| || || | || |||| |||||| ||| |||||||||| || ||||||||||||| || |||||||||||||||||||| ||||| || | || |
|
|
| T |
44223264 |
ttttagggtacccagaaaccttgatgtctccatcaatatatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttac |
44223363 |
T |
|
| Q |
338 |
acccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaag |
394 |
Q |
| |
|
|||||||| ||| ||||||||||| || ||||| || ||||| |||||||||||||| |
|
|
| T |
44223364 |
acccatcaaagctgtgagaacaccgggcctgaatgcaccactaacacccttcaaaag |
44223420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 138 - 394
Target Start/End: Original strand, 44233986 - 44234242
Alignment:
| Q |
138 |
agccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgct |
237 |
Q |
| |
|
||||||||||| || |||||||| ||||| || ||||||| ||| || ||||||||||| ||||||||||| || || ||||| ||||| |||||||||| |
|
|
| T |
44233986 |
agccacgctgagtaaagcaaagactcataaactgtaacatgaggtgaatggatatcattctgctcacagtaaccggagattctagcaaatgtttcttgct |
44234085 |
T |
|
| Q |
238 |
tctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcac |
337 |
Q |
| |
|
| || ||| | || |||| |||||| ||| |||||||||| || ||||||||||||| || |||||||||||||||||||| ||||| || | || |
|
|
| T |
44234086 |
ttttaggatacccagaaaccttgatgtctccatcaatatatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttac |
44234185 |
T |
|
| Q |
338 |
acccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaag |
394 |
Q |
| |
|
|||||||| ||| || || |||||||| ||||| || ||||| |||||||||||||| |
|
|
| T |
44234186 |
acccatcaaagccgtaagtacaccaggcctgaatgcgccactaacacccttcaaaag |
44234242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 159 - 394
Target Start/End: Original strand, 44211023 - 44211258
Alignment:
| Q |
159 |
gattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattg |
258 |
Q |
| |
|
|||||||| || ||||||| ||| || || |||||||| || |||||||| ||||| ||||| ||||| ||||||||||| || || | || |||| |
|
|
| T |
44211023 |
gattcataaactgtaacatgaggtgaatgaatatcattctgttcacagtagccagatattctagcaaatgtttcttgctttttagggtacccagaaacct |
44211122 |
T |
|
| Q |
259 |
tgatgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagcagtgagaac |
358 |
Q |
| |
|
|||||| ||| |||||||||| || ||||||||||||| || |||||||||||||||||||| ||||| || | |||||||||| ||| |||||||| |
|
|
| T |
44211123 |
tgatgtctccatcaatatatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaac |
44211222 |
T |
|
| Q |
359 |
accaggtctgaaagctccacttacacccttcaaaag |
394 |
Q |
| |
|
||| || ||||| || || || |||||||||||||| |
|
|
| T |
44211223 |
accgggcctgaatgcaccgctaacacccttcaaaag |
44211258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 43457605 - 43457669
Alignment:
| Q |
186 |
tggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagcc |
250 |
Q |
| |
|
|||||||| |||| || ||||| ||||||||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
43457605 |
tggatatcggtttgttcgcagtatccagaaattcttgcaaatgtttcttgattcttagggaagcc |
43457669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 138 - 394
Target Start/End: Complemental strand, 2877367 - 2877111
Alignment:
| Q |
138 |
agccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgct |
237 |
Q |
| |
|
||||| |||||||| || || || |||||||||||||| | ||| |||||||||||||| |||||||| || ||||| ||||| ||||| |||||||||| |
|
|
| T |
2877367 |
agccaagctgaatacagtaaggactcatagacagtaacttgaggggagtggatatcattctgctcacaatagccagagattctagcaaatgtttcttgct |
2877268 |
T |
|
| Q |
238 |
tctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcac |
337 |
Q |
| |
|
| || || | || |||||| | ||| ||||| ||||||| || | ||||||||||||| | |||||||||| ||| ||||| ||||| || | || |
|
|
| T |
2877267 |
ttttagggtaaccagaaatttttatgctcccatcaatataaccactagttttcctaccagccaatacatccatcaaagtagttttaccagctccactaac |
2877168 |
T |
|
| Q |
338 |
acccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaag |
394 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| || || ||||| || ||||||||||| |
|
|
| T |
2877167 |
acccatcaaagctgtgagaacaccaggtctaaatgcaccactaactcccttcaaaag |
2877111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 162 - 394
Target Start/End: Complemental strand, 2887110 - 2886878
Alignment:
| Q |
162 |
tcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtga |
261 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||| |||||||| || ||||| |||| ||||| |||||||| || || || | || |||||| | | |
|
|
| T |
2887110 |
tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattttta |
2887011 |
T |
|
| Q |
262 |
tgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagcagtgagaacacc |
361 |
Q |
| |
|
|| |||| ||||||| || || ||||||||||||| | |||||||| | ||| ||||| ||||| || | || ||||| | || ||||||||||| |
|
|
| T |
2887010 |
tgctcccgtcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggctgtgagaacacc |
2886911 |
T |
|
| Q |
362 |
aggtctgaaagctccacttacacccttcaaaag |
394 |
Q |
| |
|
||| || || || ||||| |||||||||||||| |
|
|
| T |
2886910 |
aggcctaaatgcaccactaacacccttcaaaag |
2886878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 419
Target Start/End: Original strand, 2897266 - 2897523
Alignment:
| Q |
162 |
tcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtga |
261 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||| |||||||| || ||||| |||| ||||| |||||||| | || | |||| |||||| | | |
|
|
| T |
2897266 |
tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaattttta |
2897365 |
T |
|
| Q |
262 |
tgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagcagtgagaacacc |
361 |
Q |
| |
|
|| | ||| | ||||| || |||||||| ||||||| | |||||||| | ||| ||||| ||||| || | || ||||| | || ||||||||||| |
|
|
| T |
2897366 |
tggtgccatcgatataaccaccggtttttctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaatgctgtgagaacacc |
2897465 |
T |
|
| Q |
362 |
aggtctgaaagctccacttacacccttcaaaagaaccaacttatcctcaacaacacct |
419 |
Q |
| |
|
||| || || || ||||| |||||||||||||| || || ||||||| || |||||| |
|
|
| T |
2897466 |
aggcctaaatgcaccactaacacccttcaaaagtactaatctatcctctactacacct |
2897523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 132 - 394
Target Start/End: Complemental strand, 49773328 - 49773066
Alignment:
| Q |
132 |
aaccggagccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggttt |
231 |
Q |
| |
|
||||||||||| || ||||| | | |||||||||||||||||||| ||||||||||||||| ||||||||||||| || || || | | ||| |||| |
|
|
| T |
49773328 |
aaccggagccatgcagaataaacaagagattcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagaaaatgttt |
49773229 |
T |
|
| Q |
232 |
cttgcttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcacc |
331 |
Q |
| |
|
|||||||||| || | ||||| || ||||| | || || ||||||| |||||||| ||||| ||||||||||| ||||||||||| ||||| || |
|
|
| T |
49773228 |
cttgcttcttagggtacccggatatagtgatttgtccttgaacatatcctgttgttttccttccagacagcacatccattagagttgttttaccagctcc |
49773129 |
T |
|
| Q |
332 |
ggtcacacccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaag |
394 |
Q |
| |
|
| | |||||| ||||| || ||||| || ||||| ||||||||| | ||||| ||||||| |
|
|
| T |
49773128 |
acttatacccattagagctgtcagaactcctggtctaaaagctccattaacacctgtcaaaag |
49773066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 138 - 394
Target Start/End: Original strand, 2160857 - 2161113
Alignment:
| Q |
138 |
agccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgct |
237 |
Q |
| |
|
||||| || ||||| | |||||||||||| || ||||||| ||| || ||||||||| |||||| || || || || || | ||||| |||| ||| | |
|
|
| T |
2160857 |
agccatgccgaatataacaaagattcataaactgtaacattaggtgaatggatatcaaattgctcgcaatatcccgatatgcgagcaaatgttttttgat |
2160956 |
T |
|
| Q |
238 |
tctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcac |
337 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||| |||||||||| || |||||||| |||| | |||||||| ||||| || || || ||||| | || |
|
|
| T |
2160957 |
tctttggatagccggatattgtgatgtttccatcaatatatccaccagttttccttccagctaaaacatccattagagtagtctttccggcaccacttac |
2161056 |
T |
|
| Q |
338 |
acccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaag |
394 |
Q |
| |
|
|||||||| |||||| || || ||||| || || || ||| | | |||||||||||| |
|
|
| T |
2161057 |
acccatcaaagcagttagtactccaggcctaaaggcgccattgatacccttcaaaag |
2161113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 4501349 - 4501297
Alignment:
| Q |
189 |
atatcattttgctcacagtacccagaaattcttgcaaaggtttcttgcttctt |
241 |
Q |
| |
|
|||||| |||| ||||| || ||||||| |||||||||||||||||| ||||| |
|
|
| T |
4501349 |
atatcagtttgttcacaataaccagaaactcttgcaaaggtttcttggttctt |
4501297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 191 times since January 2019
Visitors: 3648