View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_2 (Length: 763)
Name: NF0529_low_2
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 387 - 606
Target Start/End: Complemental strand, 19415965 - 19415746
Alignment:
| Q |
387 |
aaaaatacctttgagggttaaaaatcttgactaattgtgtattagaactagttcaatggtaagaagaagaaaaattggaagcaaaatggaaaggactgaa |
486 |
Q |
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| T |
19415965 |
aaaaatacctttgagggttaaaaatcttgactaattgtgtattagaactagttcaatggtaagaagaaaaaaaattggaagcaaaatggaaaggactgaa |
19415866 |
T |
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| Q |
487 |
ctagttggaaaagttgtgattgttcccgagtaaccaacaccccgtaagagaatgttcttgtcaaacatcgatctgtcgcttgttgtttaccaagattctt |
586 |
Q |
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| T |
19415865 |
ctagttgaaaaagttgtgattgttcctgagcaaccaacaccccgtgagagaatgtacttgtcaaacatcgatctgtcgcttgttgtttaccaagattctt |
19415766 |
T |
|
| Q |
587 |
cctctttctctgctcctcca |
606 |
Q |
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| T |
19415765 |
cctctttctttgatcctcca |
19415746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 34 - 261
Target Start/End: Complemental strand, 19416233 - 19416006
Alignment:
| Q |
34 |
tatattcatgtataattatctgcatgtatgccatttaaactattacgccatgtgaaactatgtcagaaagctattacatatgttttccgcatcattttgt |
133 |
Q |
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| T |
19416233 |
tatattcatgtataattatctgcatgtatgccatttaaactattacgccatgtgaaactatgccagaaagctattacatatgttttccgcaccattttgt |
19416134 |
T |
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| Q |
134 |
aggttttggacatgactacaccaatatagagtgaagcaaggtaagcaatgcgtcacaagccaagccagagcatcataaagacatccagtgaaaagtacgg |
233 |
Q |
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| T |
19416133 |
aggttttggacatgattacaccaatacagagtgaagcaaggtaagcaatgcgtcagaagccaagccagagcatcataaagatatctggtgaaaagtacgg |
19416034 |
T |
|
| Q |
234 |
ctggaaatttgatccacaaaatccatcc |
261 |
Q |
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| T |
19416033 |
ctggaaatttgatccaacaaatccatcc |
19416006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 406 - 606
Target Start/End: Complemental strand, 19470440 - 19470229
Alignment:
| Q |
406 |
aaaaatcttgactaattgtgtattagaactagttcaatggtaagaag-----------aagaaaaattggaagcaaaatggaaaggactgaactagttgg |
494 |
Q |
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| T |
19470440 |
aaaaatcttggataattgtgtattagaattagttcaatagaaagaaggaaaaaattgtaagcaaaattgtaagaaaaatggaaaggattgaactagttga |
19470341 |
T |
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| Q |
495 |
aaaagttgtgattgttcccgagtaaccaacaccccgtaagagaatgttcttgtcaaacatcgatctgtcgcttgttgtttaccaagattcttcctctttc |
594 |
Q |
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| T |
19470340 |
aaaagttgtgattgttcctgagcaaccaacaccccgtaagagaatgttcttgtcaaacatcgatctgtcgctcgttgtttaccaagattcttcctctttc |
19470241 |
T |
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| Q |
595 |
tctgctcctcca |
606 |
Q |
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| T |
19470240 |
tttgatcctcca |
19470229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 31813647 - 31813732
Alignment:
| Q |
128 |
ttttgtaggttttggacatgactacaccaatatagagtgaagcaaggtaagca-atgcgtcacaagccaagccagagcatcataaa |
212 |
Q |
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| T |
31813647 |
ttttgtaggttttggacatgactacaccaatatagaacaaagcaaggcaagaacatgcgccataagccaggccaaagcatcataaa |
31813732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 36460867 - 36460940
Alignment:
| Q |
88 |
aaactatgtcagaaagctattacatatgttttccgcatcattttgtaggttttggacatgactacaccaatata |
161 |
Q |
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| T |
36460867 |
aaactatgtcagaaagctattatgtatgtttcccatacctttttataggttttggacatgactacgccaatata |
36460940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 34244853 - 34244783
Alignment:
| Q |
88 |
aaactatgtcagaaagctattacatatgttttccgcatcattttgtaggttttggacatgactacaccaata |
159 |
Q |
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| T |
34244853 |
aaactatgccagaaagctattacgtctgttttccata-ctttttataggttttggacatcactacaccaata |
34244783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 2137081 - 2137012
Alignment:
| Q |
88 |
aaactatgtcagaaagctattacatatgttttccgcatcattttgtaggttttggacatgactacaccaat |
158 |
Q |
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| T |
2137081 |
aaactatgccagaaagctattacgtttgtttcccgcacctttttgtagg-tttggacacgactacatcaat |
2137012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 18757936 - 18757965
Alignment:
| Q |
130 |
ttgtaggttttggacatgactacaccaata |
159 |
Q |
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| T |
18757936 |
ttgtaggttttggacatgactacaccaata |
18757965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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