View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_22 (Length: 401)
Name: NF0529_low_22
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_22 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0070 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 184 - 401
Target Start/End: Original strand, 38906987 - 38907204
Alignment:
| Q |
184 |
tcactgtacttgataattccactgttgatgcatcaagttctgcgtgtgttgagataagaaggttgaagggaggcgataccttctttctaaaaggtggtct |
283 |
Q |
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| T |
38906987 |
tcactgtacttgataattccactgttgatgcatcaagttctgcgtgtgttgagataagaaggttgaagggaggcgataccttctttctaaaaggtggtct |
38907086 |
T |
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| Q |
284 |
aaatgatgagaattctgtatcattggttctgcggatagctgatcagaggggttagtatagttcatttctactctttaatgacttttaaatttgttggtgg |
383 |
Q |
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| T |
38907087 |
aaatgatgagaattctgtatcattggttctgcggatagctgatcagaggggttagtatagttcatttctactctttaatgacttttaaatttgttggtgg |
38907186 |
T |
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| Q |
384 |
gtagattatactttttgc |
401 |
Q |
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| T |
38907187 |
aaagtttatactttttgc |
38907204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 7247384 - 7247253
Alignment:
| Q |
20 |
acagcaaaaccaaaggtgcatggactaacatgcatttgaatttaattttttctttgtacattagtttatgaatttctgtaaaagatgtcagagacaaggg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7247384 |
acagcaaaaccaaaggtgcatggactaacatgcatttgcatttaattttttctttgtacattagtttatgaatttgtgtaaaagatgtcagagacaaggg |
7247285 |
T |
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| Q |
120 |
cagcagcagcaacaacaaaggcaggtgcagag |
151 |
Q |
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| T |
7247284 |
cagcagcagcaacaacaaaggcaggtgcagag |
7247253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 25321379 - 25321474
Alignment:
| Q |
29 |
ccaaaggtgcatggactaacatgcatttgaatttaattttttctttgtacattagtttatgaatttctgtaaaagatgtcagagacaagggcagca |
124 |
Q |
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| T |
25321379 |
ccaaaggtgaatggaccaacatgcatttgaaatttagtttttatttgtacatttattagtgaatttttgtaaaagatgttagagacaaaggcagca |
25321474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 18505 - 18409
Alignment:
| Q |
29 |
ccaaaggtgcatggactaacatgcatttgaatttaattttttctttgtacattagtttatgaatttctgt-aaaagatgtcagagacaagggcagca |
124 |
Q |
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| T |
18505 |
ccaaaggtgaatggaccaacatgcatttgaaatttagtttttctttgtacatttccttgtgaatttttgtaaaaagatgtcagtgacaaaggcagca |
18409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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