View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_26 (Length: 369)
Name: NF0529_low_26
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 3 - 340
Target Start/End: Original strand, 40964326 - 40964662
Alignment:
| Q |
3 |
tcattagtcttcgctttcgtgggtaaactacctttgtaggtttgagcatttcccttttgagattatctcaagtgaacaaaccctccaaaccactaaaaga |
102 |
Q |
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| T |
40964326 |
tcattagtcttcgctttcgtgggtaaactacctttgtaggtttgagcatttcccttttgagattatctcaagtgaacaaaccctccaaaccactaaaaga |
40964425 |
T |
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| Q |
103 |
ttacgcagttcctctatgtcaattcagaattcagtttaatagacgcaagaagatcatactcttatctgttatagccataaacaacgttgttcttattttt |
202 |
Q |
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| T |
40964426 |
ttacgcagttcctctatgtca-ttcagaattcagtttaatagacgcaagaagatcatactcttatctgttatagccataaacaacgttgttcttattttt |
40964524 |
T |
|
| Q |
203 |
cacaaatgtagagacatgtttgaatttcccaattagaagaaacttaatcaatatattttggccaaatcaaaggtatattagggacaatgataaacattca |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40964525 |
cacaaatgtagagacatgtttgaatttcccaattagaagaaacttaatcaatatattttggccaaatcaaaggtatattagggacaatgataaacattca |
40964624 |
T |
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| Q |
303 |
actcaacaatattatgaataaagataaaaaggagttaa |
340 |
Q |
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| T |
40964625 |
actcaacaaaattatgaataaagataaaaaggagttaa |
40964662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 40954163 - 40954265
Alignment:
| Q |
124 |
attcagaattcagtttaatagacgcaagaagatcatactcttatctgttatagccataaacaacgttgttcttatttttcacaaatgtagagacatgttt |
223 |
Q |
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|||||||| ||||||||||||| ||||| ||||||| ||| || ||||||||| ||||| ||||||||| |||||||||||| ||||||||||||| |
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| T |
40954163 |
attcagaaatcagtttaatagaggcaagcagatcatgctccgttccattatagccacaaacagtgttgttcttgtttttcacaaatctagagacatgttt |
40954262 |
T |
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| Q |
224 |
gaa |
226 |
Q |
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||| |
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| T |
40954263 |
gaa |
40954265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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