View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0529_low_27 (Length: 362)
Name: NF0529_low_27
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 34572973 - 34572787
Alignment:
| Q |
17 |
atgaaggtgtatattaaagaaaaattctttatgattttccnnnnnnnnnnnnnttctttatgaggaaatggaaaaattagacagaagtgaaagaactata |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
34572973 |
atgaaggtgtatatgaaagaaaaattctttatgattttccaaaaaataaaaaattctttatgaggaaatgaaaaaattagacagaagtaaaagaactata |
34572874 |
T |
|
| Q |
117 |
gaactatgttgttca-tatcaaatggctcaataaatgatctctatcactatagattacagtcgacacatatgattagatcttccgct |
202 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||| | |||||| ||| |||||||||||||| |
|
|
| T |
34572873 |
gaactatgttgttcattatcaaatggcttaataaatgatctttatcactatagattacaattgacacagatggttagatcttccgct |
34572787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 198 - 333
Target Start/End: Complemental strand, 34563991 - 34563860
Alignment:
| Q |
198 |
ccgctcacatcagttatgaccacataaatttatataaatcttgattgatcttgcagcatgaggttgtatctcccctaatctaattttattttcctaaagn |
297 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34563991 |
ccgctcacatcagttgtgaccacataaatttatataaatcttgattgatctt---gcatgaggtcgtatctcccctaatctaattttattttcctaaaga |
34563895 |
T |
|
| Q |
298 |
nnnnnntgatctctaccatcactcctatactaggct |
333 |
Q |
| |
|
| |||||||||||||||||||||||||||| |
|
|
| T |
34563894 |
aaaaatt-atctctaccatcactcctatactaggct |
34563860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 440 times since January 2019
Visitors: 3650