View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_3 (Length: 693)
Name: NF0529_low_3
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 30 - 497
Target Start/End: Complemental strand, 51825256 - 51824794
Alignment:
| Q |
30 |
agttattcctgatagggtccttcaaccacctcctcccacactaactggtaattgctcttgattcatcactaatattttgaaacaaataaataaattttat |
129 |
Q |
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| T |
51825256 |
agttattcctgatagggtccttcaaccacctcctcccacactaactagtaattgctcttgattcatcactaatattttgaaacaaatgaataaattttat |
51825157 |
T |
|
| Q |
130 |
tttgtattagggccgggatgaagtttttctcatttacctgatcataaattttatttctttaaagatatggtgattgctagaaaagcttcacttcttcgat |
229 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51825156 |
tttgtattaggg-----atgaagtttttctcatttacctgatcataaattttatttctttaaagatatggtgattgctagaaaagcttcacttcttcgat |
51825062 |
T |
|
| Q |
230 |
tcatgaagaaaaggaatgtcaggtatgcctctcaagcaaattagattaaagtttttattcaaggaaatatagcatgttgcatctgcctacatgtaatctt |
329 |
Q |
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| T |
51825061 |
tcatggagaaaaggaatgtcaggtatgcctctcaagcaaattagattaaagtttttattcaaggaaatatagcatgttgcatctgcctacatgtaatctt |
51824962 |
T |
|
| Q |
330 |
aaataactcaaattggctcgcacaataaatcctttttccatgtctctgtctatcctttattgaaatgttgaaacattctcaatcaagggtgaactcaacg |
429 |
Q |
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| T |
51824961 |
aaataactcaaattggctcgcacaataaatcctttttccatgtctctgtctatccttgattgaaatgttgaaacattctcaatcaagggtgaattcaacg |
51824862 |
T |
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| Q |
430 |
tctagaactactttgtgatgagatttgtttgatgcataaattatattattctttcgacacaagcaaaa |
497 |
Q |
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| T |
51824861 |
tcaagaactaatttgtgatgagatttgtttgatgcataaattatattattctttcgacgcaagcaaaa |
51824794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 493 - 681
Target Start/End: Complemental strand, 51824590 - 51824402
Alignment:
| Q |
493 |
caaaaatcacattgtatataccaactgattccatccaattcaaggtttgctgaagagccaaagcctcttgtgtcaccagaaattgatgcataatgtcatt |
592 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51824590 |
caaaaatcacattttatataccaactgattccatccaattcaaggtttgctgaagagccaaagcctcttgtgtcactagaaattgatgcataatgtcatt |
51824491 |
T |
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| Q |
593 |
ttcttagtaaagaaaatcttaattttaattctagtccattatgcaaattggtttgcctcttgttatttactttgcttatttcctgagtg |
681 |
Q |
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| T |
51824490 |
ttcttagtaaagaaaatcttaattttaattctagtccattgtgcaaattggttggcctcttgttatttactttgcatatttcctgagtg |
51824402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 174 - 291
Target Start/End: Complemental strand, 51828035 - 51827918
Alignment:
| Q |
174 |
taaattttatttctttaaagatatggtgattgctagaaaagcttcacttcttcgattcatgaagaaaaggaatgtcaggtatgcctctcaagcaaattag |
273 |
Q |
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||||||| |||||||| ||||||| || ||||||||||||||||||| |||||||||| |||| ||||| | ||||||||||||||| ||||||| |
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| T |
51828035 |
taaatttaatttctttgcagatatgccaatagctagaaaagcttcacttcgtcgattcatggagaagaggaaagataggtatgcctctcaaacaaattaa |
51827936 |
T |
|
| Q |
274 |
attaaagtttttattcaa |
291 |
Q |
| |
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||| |||||| ||||||| |
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| T |
51827935 |
attcaagtttatattcaa |
51827918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 585 - 661
Target Start/End: Complemental strand, 51827720 - 51827644
Alignment:
| Q |
585 |
atgtcattttcttagtaaagaaaatcttaattttaattctagtccattatgcaaattggtttgcctcttgttattta |
661 |
Q |
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||||||||||||||||| ||||||||||| | |||||||| |||| ||||||||| |||||||||||||||||| |
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| T |
51827720 |
atgtcattttcttagtattaaaaatcttaatctagattctagttcattgtgcaaattgatttgcctcttgttattta |
51827644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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