View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_30 (Length: 356)
Name: NF0529_low_30
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 10 - 295
Target Start/End: Complemental strand, 6972615 - 6972330
Alignment:
| Q |
10 |
aacaaaatgatcgatgttacaatgtcacatcatatgttgaatcacacacaaatataatatacatacctgcttccaggaagggaatgttggctagttgctt |
109 |
Q |
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| T |
6972615 |
aacaatatgatcgatgttacaatgtcacaacatatgttgaatcgcacacaaatattatatacatacctgcttccaggaagggaatgttggcgagttgctt |
6972516 |
T |
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| Q |
110 |
gagcacaaagaccttggagttgtgtgaggaggtgaaatatttgctttccctttttgtagcttgtaccaaactcagttttagagataatatctgcagtgag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6972515 |
gagcacaaagaccttggagttgtgtgaggaggtgaaatatttgctttccctttttgtagcttgtactaaactcagttttagagataatatctgcagtgag |
6972416 |
T |
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| Q |
210 |
tttagtgaagtattctccaatttccacttcatttttgtcaccctccaatattgcattttgtagtgattcaagcatctccttggtgc |
295 |
Q |
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| T |
6972415 |
tttagtgaagtattctccaatttccacttcatatttgtcaccctccaatattgcattttgtagtgattcaagcatctccttggtgc |
6972330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 1267342 - 1267201
Alignment:
| Q |
73 |
tacctgcttccaggaagggaatgttggctagttgcttgagcacaaagaccttggagttgtgtgaggaggtgaaatatttgctttccctttttgtagcttg |
172 |
Q |
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|||||||| ||||||| | || | |||| | ||||||||||||||||| ||||| ||||||||| || ||||||| | ||||||||| |||||||| |
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| T |
1267342 |
tacctgctgccaggaaagcaaaggtggcgacttgcttgagcacaaagagtctggagaactgtgaggagatggaatattttccttcccttttggtagcttg |
1267243 |
T |
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| Q |
173 |
taccaaactcagttttagagataatatctgcagtgagtttag |
214 |
Q |
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| T |
1267242 |
caccaaactcagttctagagataatatctgcagtaagtttag |
1267201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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