View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_31 (Length: 356)
Name: NF0529_low_31
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 131 - 296
Target Start/End: Original strand, 20377020 - 20377185
Alignment:
| Q |
131 |
tttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccataaggctgaatggcaagccccggtgttggtgttgccggagacaa |
230 |
Q |
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| T |
20377020 |
tttgcaattttccagaaccacgaggacgtccccttccacgcttctcatcacttccataaggctgaatggcaagccctggtgtcggtgttgccggagacaa |
20377119 |
T |
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| Q |
231 |
tggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcatattctga |
296 |
Q |
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| T |
20377120 |
tggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcagattctga |
20377185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 131 - 293
Target Start/End: Original strand, 20369091 - 20369253
Alignment:
| Q |
131 |
tttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccataaggctgaatggcaagccccggtgttggtgttgccggagacaa |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || || ||||| |||||||||| |
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| T |
20369091 |
tttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccacaaggctgaatagcaagccctggagtcggtgtcaccggagacaa |
20369190 |
T |
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| Q |
231 |
tggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcatattc |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20369191 |
tggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcagattc |
20369253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 131 - 293
Target Start/End: Original strand, 20389392 - 20389554
Alignment:
| Q |
131 |
tttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccataaggctgaatggcaagccccggtgttggtgttgccggagacaa |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || || ||||| |||||||||| |
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| T |
20389392 |
tttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccacaaggctgaatagcaagccctggagtcggtgtcaccggagacaa |
20389491 |
T |
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| Q |
231 |
tggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcatattc |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20389492 |
tggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcagattc |
20389554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 133 - 195
Target Start/End: Original strand, 20347697 - 20347759
Alignment:
| Q |
133 |
tgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccataaggctga |
195 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20347697 |
tgcagttttccagaaccacgaggacgtccccttccacgcttctcctcacttccactaggctga |
20347759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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