View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_37 (Length: 342)
Name: NF0529_low_37
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_37 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 227 - 313
Target Start/End: Original strand, 146180 - 146266
Alignment:
| Q |
227 |
gtgttttctcacctaagtaatcaaccacagtttttccattagtgtatcgaccagtaggtttgccaccatcaaagtctataccgtaag |
313 |
Q |
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| T |
146180 |
gtgttttctcacctaagtaatcaaccacagtttttccattagtgtttcgaccagtaggtttgccaccatcaaagtctataccgtaag |
146266 |
T |
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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 313
Target Start/End: Original strand, 36700229 - 36700314
Alignment:
| Q |
228 |
tgttttctcacctaagtaatcaaccacagtttttccattagtgtatcgaccagtaggtttgccaccatcaaagtctataccgtaag |
313 |
Q |
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| T |
36700229 |
tgttttctcacctatgtaaacaacagttgtttttccattagtgcatcgaccagtaggtttggcaccaccaaagtctataccgtaag |
36700314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 36700162 - 36700218
Alignment:
| Q |
23 |
aagtccggacactagacactacacatcaataccaatattaatttgagaaaagagaat |
79 |
Q |
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| T |
36700162 |
aagtccggacactggacactacacatcaataccgatattaatttgagaaaagagaat |
36700218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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