View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_39 (Length: 338)
Name: NF0529_low_39
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 54821135 - 54820807
Alignment:
| Q |
1 |
actatacatttcttgatcaagaagtatcgtctctttggtttcaaggcttcgcacatgaaattaaaggacgtaattttggcattttgcaatcatagttatt |
100 |
Q |
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| T |
54821135 |
actatacatttcttgatcaagaagtatcgtctctttggtttcaaggcttcacacatgaaattaaaggacgtaattttggcattttgcaatcatagttatt |
54821036 |
T |
|
| Q |
101 |
ttcctttattagaaaaatagaaaaccacacaaatttatattgtatacgtgtaaggcccaaacgtctcaataaattaaatgaacagaaccttatcaaaatt |
200 |
Q |
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| T |
54821035 |
ttcctttattagaaaaatagaaaaccacacaaatttatattgtatacgtgtaaggcccaaacgtctcaataaattaaatgaacagaaccttatcaaaatt |
54820936 |
T |
|
| Q |
201 |
aacattcaaaactagaatataaactcatacctaggacc--ataataaaacacaaagaaaaccttggaaagttactccaatctgataagtgctaactaacc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54820935 |
aacattcaaaactagaatataaactcatacctaggaccatataataaaacacaaagaaaaccttggaaagttactccaatctgataagtgctaactaacc |
54820836 |
T |
|
| Q |
299 |
cttgttctgttctattatattgtgtctct |
327 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
54820835 |
cttgttctgttctattatattgtgtctct |
54820807 |
T |
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