View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_4 (Length: 643)
Name: NF0529_low_4
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 44 - 627
Target Start/End: Original strand, 42824078 - 42824656
Alignment:
| Q |
44 |
ataaatagttgaattttaaatgaagtcagagaaaatgaaagaagtggtatnnnnnnnnnnnnnnnnnagagatattgggataagcagcaacaagataggg |
143 |
Q |
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| T |
42824078 |
ataaatacttgaattttaaatgaagtcggagaaaatgaaagaagtggtatatgatgatgat------agagatattgggataagcagcaacaagataggg |
42824171 |
T |
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| Q |
144 |
tcaagtccaccaagctgtgagcacaagtgttatggatgtaatccatgtgaagccattcaagttccaagtactgaaagcagtaagagaaatcatttgggtc |
243 |
Q |
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| T |
42824172 |
tcaagtccaccaagctgtgagcacaagtgttatggatgcaatccatgtgaagccattcaagttccaagtactgaaagcagtaagagaaatcatttgggtc |
42824271 |
T |
|
| Q |
244 |
ttcagtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctacagtccatgatcattctatattctaatattaattattaatta |
343 |
Q |
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| T |
42824272 |
ttcagtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctacagtccatgatcattctatattctaatattaattattaatta |
42824371 |
T |
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| Q |
344 |
tccattaattcaatgtagtatatagttcatctgttaggttcatattatatatattttcttccctttgtacaaatattaaagttcaaaggatttcattatt |
443 |
Q |
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| T |
42824372 |
tccattaattcaatgtagtatatagttcatctgttaggttcatattatatatattttcttccctttgtacaaatattaaagttcaaaggatttcattatt |
42824471 |
T |
|
| Q |
444 |
attaattaatttgtggttggaattgttggatgacttattatgctacagagccttgtagaactttttgttttttgtcaaactagaaaaggaaaaatggata |
543 |
Q |
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| T |
42824472 |
attaattaatttgtggttggaattgttggatgacttattatgctacagagccttgtagaactttttgttttttgtcaaactagaaaaggaaaaatggata |
42824571 |
T |
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| Q |
544 |
a-nnnnnnnnnnnnngaaagagaaattatgaagnnnnnnntattgacgaaaaaagaacatttaattctaataattttactagtgt |
627 |
Q |
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| T |
42824572 |
attttttttttttttgaaagagaaattatgaagaaaaaaatattgacgaaaaaagaacattcaattctaataattttactagtgt |
42824656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 6026272 - 6026331
Alignment:
| Q |
248 |
gtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctacagtcc |
307 |
Q |
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| T |
6026272 |
gtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtcc |
6026331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 6026174 - 6026247
Alignment:
| Q |
138 |
atagggtcaagtccaccaagctgtgagcacaagtgttatggatgtaatccatgtgaagccattcaagttccaag |
211 |
Q |
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| T |
6026174 |
atagggtcaagtccaccaagctgtgagcataaatgctatgattgttttccatgtgaagctactcaagtgccaag |
6026247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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