View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_40 (Length: 331)
Name: NF0529_low_40
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 302
Target Start/End: Complemental strand, 4508804 - 4508514
Alignment:
| Q |
13 |
tgagatgtaaatttgacatccaaagcttgaagcttatccttcagctgaaaattggttccttatcattcacaattatgcatagacgttttggagaacaaaa |
112 |
Q |
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| T |
4508804 |
tgagatgtaaatttgacatccaaagcttgaagcttatccttcagctgaaaattggttccttatcattcacaattatgcatagacgttttggagaacaaaa |
4508705 |
T |
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| Q |
113 |
atgaacatggctgtgagaaaaacaggatcaaaaccaagttaatttatattcga-tttactttacactaacccaacatttctcacatcaatagccacagca |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4508704 |
atgaacatggctgtgagaaaaacaggatcaaaaccaagttaatttatattcgattttactttacactaacccaacatttctcacatcaatagccacagca |
4508605 |
T |
|
| Q |
212 |
taaagcaagagtctttttggtctattcctttgctattataccatttcctcatttccttgcttcttctattcagagtctgagtccatgttac |
302 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4508604 |
taaagcaagagtttttttggtctattcctttgctattataccatttcctcatttccttgcatcttctattcagagtctgagtccatgttac |
4508514 |
T |
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