View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_42 (Length: 328)
Name: NF0529_low_42
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_42 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 328
Target Start/End: Complemental strand, 6498984 - 6498664
Alignment:
| Q |
9 |
gaacaatatggtcagcaatagaattcggctccgccgtagaggcctcaatccaagctcgggctagagaccaaagagccct--agctgttgcaagaaagtaa |
106 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| | | ||| ||||||| || |
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| T |
6498984 |
gaacaaaatggtgagcaatagaattcggctccgccgtagaggcctcaatccaagctcaggctagagatcaaagagccctgaaattattgtaagaaaggaa |
6498885 |
T |
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| Q |
107 |
gaaatgtctaattgattcgacatcaccacaactgcagattgagtagtttgannnnnnnatcatcccgcatcctttggaacataatttacttgttgtatag |
206 |
Q |
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| T |
6498884 |
gaaatgtctaact-attcgacatcaccacaactgcagattgagtagtttgatttttttataatcccgcatcctttgaaacataatttacttgttgtatag |
6498786 |
T |
|
| Q |
207 |
attaaatgttgaatcacaagtggagctcaggggatcaccctcattgatccaagagcaaccacataagtgagaaagacgtcatactttaagccaaaacctt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
6498785 |
attaaatgttgaatcacaagtggagctcaggggatcaccctcattggtccaagagcaaccacataagtgaaaaagacgtcataccttaagccaaaacctt |
6498686 |
T |
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| Q |
307 |
aaagcattggatttatgtgtct |
328 |
Q |
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|||||||||| ||||||||||| |
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| T |
6498685 |
aaagcattgggtttatgtgtct |
6498664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 22403619 - 22403695
Alignment:
| Q |
11 |
acaatatggtcagcaatagaattcggctccgccgtagaggcctcaatccaagctcgggctagagaccaaagagccct |
87 |
Q |
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| T |
22403619 |
acaacatggtcagaaatacaattcggctccgctgtagagactccaatccaagctcggactaaagactatagagccct |
22403695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 37943148 - 37943070
Alignment:
| Q |
9 |
gaacaatatggtcagcaatagaattcggctccgccgtagaggcctcaatccaagctcgggctagagaccaaagagcccta |
88 |
Q |
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| T |
37943148 |
gaacaaaatggtcatcaatagaattcggctccgccgtagaaacc-caatccaagctcggactagagaccaaagagcccta |
37943070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 45085186 - 45085314
Alignment:
| Q |
11 |
acaatatggtcagcaatagaattcggctccgccgtagaggcctcaatccaagctcgggctagagaccaaagagccct--agctgttgcaagaaagtaaga |
108 |
Q |
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|||| |||||||| ||||||||| ||||| ||||||||| || |||||||||||||| ||||||||||||||||||| | | |||||||| || || | |
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| T |
45085186 |
acaaaatggtcagaaatagaatttggctctgccgtagagaccccaatccaagctcggactagagaccaaagagccctgaatcaattgcaagagaggaaca |
45085285 |
T |
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| Q |
109 |
aatgtctaattgattcgacatcaccacaa |
137 |
Q |
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| T |
45085286 |
aatgtctaactgattcaacgtctccacaa |
45085314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 1188610 - 1188664
Alignment:
| Q |
258 |
agagcaaccacataagtgagaaagacgtcatactttaagccaaaaccttaaagca |
312 |
Q |
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| T |
1188610 |
agagcaaccacataagtgagagagacgccacacttttacccaaaaccttaaagca |
1188664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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