View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_43 (Length: 323)
Name: NF0529_low_43
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 272
Target Start/End: Original strand, 2435466 - 2435726
Alignment:
| Q |
12 |
cagaacctgtgaaaactactaattataaccacaaattgtcaagagaaatctagtttataaggaatttgacggtttccttaattttaagtctgactacatt |
111 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2435466 |
cagaacctatgaaaactactaattataaccacaaattgtcaagagaaatctagtttataaggaatttgacgatttccttaattttaagtctgactacatt |
2435565 |
T |
|
| Q |
112 |
ctatgccatgtttggaaacacattggaagtttaccttttaaatcaaggatatggtctccaacttctcaactcaatcagtaaaaccacttttacaatcatc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2435566 |
ctatgccatgtttggaaacacattggaagtttaccttttaaatcaaggatatggtctccaacttctcaactcaatcagtaaaaccacttttacaatcatc |
2435665 |
T |
|
| Q |
212 |
ttgggctctacgcaacctaactttactcnnnnnnnnggaagcaacctaacatagatctctg |
272 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2435666 |
ttgggctctacgcaacctaactttactcaaaaaaaaggaagcaacctaacatagatctctg |
2435726 |
T |
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