View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_45 (Length: 315)
Name: NF0529_low_45
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 30 - 294
Target Start/End: Original strand, 6498110 - 6498370
Alignment:
| Q |
30 |
gatttatgaactgaattttggctcaaattatgtttaggattgttcataaccaattaaatatataggattcaattagcaggaaagaaagaaggaagtgtgg |
129 |
Q |
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| T |
6498110 |
gatttatgaactgaatttgtgctcaaattatgtttaggattgttcatagccaattaaatatataggattcaattaggaggaaagaaagaaggaagtgtgg |
6498209 |
T |
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| Q |
130 |
gagtaaagataatggaaccactgattaaagttaagggaagtgaataatatattattacaatgggttataaatgtacttgaaggataccatatgactaaac |
229 |
Q |
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| T |
6498210 |
gagtaaagataatggaaccactgattaaagttaagggaagtgaataatatattattacaatgggttataaatgtacttgaagg-----atatgactaaac |
6498304 |
T |
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| Q |
230 |
aaaacctctatatcatggaa-tttatgtgtacacaatataaaataaatggaatcaattactatgac |
294 |
Q |
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| T |
6498305 |
aaaacctctatatcatggaactttatgtgtacccgatataaaataaatggaatcaattactatgac |
6498370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 73 - 285
Target Start/End: Complemental strand, 6460501 - 6460292
Alignment:
| Q |
73 |
tcataaccaattaaatatataggattcaattagcaggaaagaaagaaggaagtgtgggagtaaagataatggaaccactgattaaagttaagggaagtga |
172 |
Q |
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| T |
6460501 |
tcatagccaattaaatat----gattcaattagaaggaaagaaagatggaagtgtgggagtaaagataatggaaccactgattaaagttaagggaagtga |
6460406 |
T |
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| Q |
173 |
ataatatattattacaatgggttataaatgtacttgaaggataccatatgactaaacaaaacctctatatcatggaa-tttatgtgtacacaatataaaa |
271 |
Q |
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| T |
6460405 |
ataatatattattacaatgggttataaatgtacttgaaggatcccatatgactaaacaaaacctctatatcatggaactttatgtgtacacgatataaaa |
6460306 |
T |
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| Q |
272 |
taaatggaatcaat |
285 |
Q |
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| T |
6460305 |
taaatggaatcaat |
6460292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 6474912 - 6474979
Alignment:
| Q |
113 |
gaaagaaggaagtgtgggagtaaagataatggaaccactgattaaag-ttaagggaagtgaataatata |
180 |
Q |
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| T |
6474912 |
gaaagaagaaagtgtgggagtaaagaggattgaa-cacagattaaagtttaagggaagtgaaaaatata |
6474979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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