View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_46 (Length: 309)
Name: NF0529_low_46
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 6219245 - 6219039
Alignment:
| Q |
16 |
ccaacaatatttttccgatggttgatgttcataacagcgatgcaaaactcacattatatctaactatatgccaaaagggacattacgaagttctccgatt |
115 |
Q |
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| T |
6219245 |
ccaacaatatttttccgatggttgatgttcataacagcgatgcaaaactcacattatatctaactatatgccaaaagggacattactaagttctccgatt |
6219146 |
T |
|
| Q |
116 |
agttcttttaataattcattgttcttatgccaaacgggatatgaaagttgtaacaccctaaattttcaagaaaccctaggattgtgagctgaagtgtgat |
215 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6219145 |
agttcttttaataattcattgttcatatgccaaaagggatatgaaagttgtaacaccctaaattttcaagaaaccctaggattgtgagctgacgtgtgat |
6219046 |
T |
|
| Q |
216 |
aagctta |
222 |
Q |
| |
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||||||| |
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| T |
6219045 |
aagctta |
6219039 |
T |
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