View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_5 (Length: 627)
Name: NF0529_low_5
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 95 - 328
Target Start/End: Complemental strand, 12956637 - 12956404
Alignment:
| Q |
95 |
aatcgggggcttcaactttgaaggtggcagaagctatgttgtcagaggagctttcagaccaaacaatggcagtttttcctcttccatttcctctcataaa |
194 |
Q |
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| T |
12956637 |
aatcgggggcttcaactttgaaggtggcagaagctatgttgtcagaggagctttcagaccaaacaatggcagtttttcctcttccatttcctctcataaa |
12956538 |
T |
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| Q |
195 |
tatataacgcttattctttggtatgtgcactttttctcttcacatgatcaaaatcaaaatgtaatcaataaattaattagttaatcatataattaacttc |
294 |
Q |
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| T |
12956537 |
tatataacgcttattctttggtatgtgcactttttctcttcacatgatcaaaatcaaaatgtaatcaataaattaattagttaatcatataattaacttc |
12956438 |
T |
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| Q |
295 |
tttttgactcaatagaattaacttgataagtagc |
328 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
12956437 |
tttttgactcaatagaattaacttgataagtagc |
12956404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 422 - 627
Target Start/End: Complemental strand, 12956310 - 12956105
Alignment:
| Q |
422 |
ttgtacctatatactccttttctaatatggacgatgatccaattagaatttccttcaggaattgaatctatggcagcttgtactgatttaaattctccat |
521 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12956310 |
ttgtacctatatactccttttctaatatggacgatgacccaattagaatttccttcaggaattgaatctatggcagcttgtactgatttaaattctccat |
12956211 |
T |
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| Q |
522 |
ttccattgatatcaactttaatagtgcgattagttcctaccttttgtgttaacataggagagtctatgaccgtttttacatcaaaggcaagagcacaata |
621 |
Q |
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| T |
12956210 |
ttccattgatatcaactttaatagtgcgattagttcctatcttttgtgttaacataggagagtctatgaccgtttttacatcaaaggcaagagcacaata |
12956111 |
T |
|
| Q |
622 |
tggtac |
627 |
Q |
| |
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|||||| |
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| T |
12956110 |
tggtac |
12956105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 433 - 627
Target Start/End: Original strand, 14242191 - 14242385
Alignment:
| Q |
433 |
tactccttttctaatatggacgatgatccaattagaatttccttcaggaattgaatctatggcagcttgtactgatttaaattctccatttccattgata |
532 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| |
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| T |
14242191 |
tactccttttctaatatgaacgatgacccaattagaatttcctttaggaattgaatctatggcagcttgtactgatgtaaagtctccatttccattaata |
14242290 |
T |
|
| Q |
533 |
tcaactttaatagtgcgattagttcctaccttttgtgttaacataggagagtctatgaccgtttttacatcaaaggcaagagcacaatatggtac |
627 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
14242291 |
tcaactttaatagtgcgattagttcctaccttttgcgctaacataggagagtctatgactgtttttacatcaaaggcaagagcacaatatggtac |
14242385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 102 - 248
Target Start/End: Original strand, 14241969 - 14242115
Alignment:
| Q |
102 |
ggcttcaactttgaaggtggcagaagctatgttgtcagaggagctttcagaccaaacaatggcagtttttcctcttccatttcctctcataaatatataa |
201 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||||| |
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| T |
14241969 |
ggcttcaactttgaaggtggcagaagctatgttgttagaggagctttcggaccaaacaattgcagtttttcctcttccatttcctctcatgaatgtataa |
14242068 |
T |
|
| Q |
202 |
cgcttattctttggtatgtgcactttttctcttcacatgatcaaaat |
248 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
14242069 |
cgcttattctttggtatgtgcactttttctcttcacgtgattaaaat |
14242115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 277 - 323
Target Start/End: Original strand, 14242117 - 14242162
Alignment:
| Q |
277 |
aatcatataattaacttctttttgactcaatagaattaacttgataa |
323 |
Q |
| |
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|||||||||||||||||| |||||||| |||| |||||||||||||| |
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| T |
14242117 |
aatcatataattaacttc-ttttgacttaatataattaacttgataa |
14242162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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