View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_51 (Length: 284)
Name: NF0529_low_51
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 34555275 - 34555538
Alignment:
| Q |
1 |
aagcgagacaagtgatgctgtgttggaattatcttccttgccaagagcctcaaaagataacaggactaactatgtgcttcaaagtcgttcttgatggtat |
100 |
Q |
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| T |
34555275 |
aagcgagacaagtgatgctgtgttggaattatcttccttgccaagagcctcaaaagataacaggactaactatgtgcttcaaagtcgttcttgatggtat |
34555374 |
T |
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| Q |
101 |
ggattataaatagagcttttgtattcttttttgtaggttgcagcatgttttcatgcaagttatcatgtaattttagtcccttgaagaagaagcaatcttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34555375 |
ggattataaatagagcttttgtattcttttttgtaggttgcagcatgttttcatgcaagttatcatgtaattttagtcccttgaagaagaagcaaccttg |
34555474 |
T |
|
| Q |
201 |
tatccttattctgaatataaattatgttttataaatgatgaatatgattggcatttgatgatgt |
264 |
Q |
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| T |
34555475 |
tatccttattctgaatataaatgatgttttataaatgatgaatatgattggcatctgatgatgt |
34555538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 36284408 - 36284472
Alignment:
| Q |
1 |
aagcgagacaagtgatgctgtgttggaattatcttccttgccaagagcctcaaaagataacagga |
65 |
Q |
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||||||| |||| |||||||||| |||||||| ||||||||||| |||||||||||||||||||| |
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| T |
36284408 |
aagcgaggcaagagatgctgtgtcggaattatgttccttgccaaaagcctcaaaagataacagga |
36284472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 264
Target Start/End: Complemental strand, 31809488 - 31809421
Alignment:
| Q |
197 |
cttgtatccttattctgaatataaattatgttttataaatgatgaatatgattggcatttgatgatgt |
264 |
Q |
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|||||||| ||||||||||| |||||||| |||| ||||||||||||||||||||||| |||| |||| |
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| T |
31809488 |
cttgtatctttattctgaatgtaaattatattttgtaaatgatgaatatgattggcatctgataatgt |
31809421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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