View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_52 (Length: 278)
Name: NF0529_low_52
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_52 |
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| [»] scaffold0087 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 42714154 - 42714109
Alignment:
| Q |
224 |
gttggaaaatgttaattcagaacttttacaacctacatagtataat |
269 |
Q |
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| T |
42714154 |
gttggaaaatgttaatttagaacttttacaacctacatagtataat |
42714109 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 29192536 - 29192573
Alignment:
| Q |
35 |
tagagtagtgatatttgtatatctctttcttacaactt |
72 |
Q |
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| T |
29192536 |
tagagtagtgatatttgtacatctctttcttacaactt |
29192573 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 51487931 - 51487893
Alignment:
| Q |
34 |
ttagagtagtgatatttgtatatctctttcttacaactt |
72 |
Q |
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| T |
51487931 |
ttagagaagtgatatttgtacatctctttcttacaactt |
51487893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0087
Description:
Target: scaffold0087; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 26950 - 26986
Alignment:
| Q |
36 |
agagtagtgatatttgtatatctctttcttacaactt |
72 |
Q |
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| T |
26950 |
agagtagtgatatttgtacatctctttcttataactt |
26986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 15182471 - 15182507
Alignment:
| Q |
36 |
agagtagtgatatttgtatatctctttcttacaactt |
72 |
Q |
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|
|||||||||||||||||| ||||||||||| |||||| |
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| T |
15182471 |
agagtagtgatatttgtacatctctttctttcaactt |
15182507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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