View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_62 (Length: 263)
Name: NF0529_low_62
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_62 |
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| [»] scaffold0174 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 41 - 235
Target Start/End: Original strand, 24895007 - 24895201
Alignment:
| Q |
41 |
atatcctcctccacgaccttcatatcctcctcttaccgaactatattcgtttcctcctccccaattgcctctatttctccctcttctagcttctctatgt |
140 |
Q |
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| T |
24895007 |
atatcctcctccaggtccttcatatcctcctcttaccgaactatattcgtttcctcctccccaattgcctctatttctccctcttctagcttctctacgt |
24895106 |
T |
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| Q |
141 |
tttcctccttccaacaatttatctaccacccgatatataatattttcaaataacccatcaacatttcctccttcatggtctccattgtgtccatc |
235 |
Q |
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| T |
24895107 |
tttcctcctcccaacaatttatctaccatccgatgtataatattttcaaataatccatcaacatttcctccttcatggtctccattgtgtccatc |
24895201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0174 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0174
Description:
Target: scaffold0174; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 32165 - 32209
Alignment:
| Q |
195 |
ccatcaacatttcctccttcatggtctccattgtgtccatcttca |
239 |
Q |
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| T |
32165 |
ccatcaacatttcctccctcatggtctccattgtgtccaccttca |
32209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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