View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0529_low_63 (Length: 262)
Name: NF0529_low_63
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_63 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 9 - 262
Target Start/End: Complemental strand, 6498984 - 6498732
Alignment:
| Q |
9 |
gaacaatatggtcagcaatagaattcggctccgccgtagaggcctcaatccaagctcgggctagagaccaaagagccctgaaactattgcaagaaagtaa |
108 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||| ||||||| || |
|
|
| T |
6498984 |
gaacaaaatggtgagcaatagaattcggctccgccgtagaggcctcaatccaagctcaggctagagatcaaagagccctgaaattattgtaagaaaggaa |
6498885 |
T |
|
| Q |
109 |
gaaatgtctaattgattcgacatcaccacaactgcagattgagtagtttgannnnnnnatcatcccgcatcctttggaacataatttacttgttgtatag |
208 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6498884 |
gaaatgtctaact-attcgacatcaccacaactgcagattgagtagtttgatttttttataatcccgcatcctttgaaacataatttacttgttgtatag |
6498786 |
T |
|
| Q |
209 |
attaaatgttgaatcacaagtggagctcaggggatcaccctcattgatccaaga |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6498785 |
attaaatgttgaatcacaagtggagctcaggggatcaccctcattggtccaaga |
6498732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 22403619 - 22403710
Alignment:
| Q |
11 |
acaatatggtcagcaatagaattcggctccgccgtagaggcctcaatccaagctcgggctagagaccaaagagccctgaaactattgcaaga |
102 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||| |||||| | |||||||||||||| ||| |||| | ||||||||||||| | ||||||| |
|
|
| T |
22403619 |
acaacatggtcagaaatacaattcggctccgctgtagagactccaatccaagctcggactaaagactatagagccctgaaacaaatgcaaga |
22403710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 45085186 - 45085314
Alignment:
| Q |
11 |
acaatatggtcagcaatagaattcggctccgccgtagaggcctcaatccaagctcgggctagagaccaaagagccctgaaactattgcaagaaagtaaga |
110 |
Q |
| |
|
|||| |||||||| ||||||||| ||||| ||||||||| || |||||||||||||| |||||||||||||||||||||| | ||||||||| || || | |
|
|
| T |
45085186 |
acaaaatggtcagaaatagaatttggctctgccgtagagaccccaatccaagctcggactagagaccaaagagccctgaatcaattgcaagagaggaaca |
45085285 |
T |
|
| Q |
111 |
aatgtctaattgattcgacatcaccacaa |
139 |
Q |
| |
|
||||||||| |||||| || || |||||| |
|
|
| T |
45085286 |
aatgtctaactgattcaacgtctccacaa |
45085314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 37943148 - 37943066
Alignment:
| Q |
9 |
gaacaatatggtcagcaatagaattcggctccgccgtagaggcctcaatccaagctcgggctagagaccaaagagccctgaaac |
92 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
37943148 |
gaacaaaatggtcatcaatagaattcggctccgccgtagaaacc-caatccaagctcggactagagaccaaagagccctaaaac |
37943066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 305 times since January 2019
Visitors: 3649