View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0529_low_66 (Length: 257)

Name: NF0529_low_66
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0529_low_66
NF0529_low_66
[»] chr4 (3 HSPs)
chr4 (12-257)||(2920651-2920896)
chr4 (14-93)||(2935766-2935842)
chr4 (114-146)||(2935698-2935730)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 2920896 - 2920651
Alignment:
Q  12 atgaacacaaagcatagtagttttatatttgatcacacaacacaatatttcatacaaagccaatcaatgcaaacaacatatagctcaagataaatttttt 111  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||| ||| |||||||||||||||||||||||| |||| | |||    
T  2920896 atgaacacaaagcatagtaattttatatttgatcacacaatacaatacttcatacaaagctaatgaatgcaaacaacatatagctcaagttaaaatgttt 2920797  T
Q  112 gaagaacacttgaacacacaacatatatatttatgttccacccgcttaataatattattccataagctagctcaaacgccacaataagtgcgcatagcaa 211  Q
    | ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2920796 ggagaacacttgaacacacaacatatatatttatggtccaccctcttaataatattattccataagctagctcaaacgccacaataagtgcgcatagcaa 2920697  T
Q  212 attggtctctttggcctttttcagtgtaataatacttgaggaattc 257  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  2920696 attggtccctttggcctttttcagtgtaataatacttgaggaattc 2920651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 2935842 - 2935766
Alignment:
Q  14 gaacacaaagcatagtagttttatatttgatcacacaaca-caatatttcatacaaagccaatcaatgcaaacaacatata 93  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||    ||||| |||||||||||||    
T  2935842 gaacacaaagcatagtagttttatatttgatcacacaacaccaatacttcttacaaag----tcaatacaaacaacatata 2935766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 2935730 - 2935698
Alignment:
Q  114 agaacacttgaacacacaacatatatatttatg 146  Q
    |||||||||||||||||| ||||||||||||||    
T  2935730 agaacacttgaacacacaccatatatatttatg 2935698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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