View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_7 (Length: 543)
Name: NF0529_low_7
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 15 - 296
Target Start/End: Original strand, 6118346 - 6118627
Alignment:
| Q |
15 |
gaggacaaatgatataatttctaggttcttgtttggttttacatagatagtatttacataggagtaattttgtttgaatgcaaaaatgagacgagcgtat |
114 |
Q |
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| T |
6118346 |
gaggacaaatgatataatttctaggttcttgtttggttttacatagatagtatttacataggagtaattttgtttgaatgcaaaaatgagacgagcgtat |
6118445 |
T |
|
| Q |
115 |
tcacttatatataccaaagtcttttataaatttttaaacactctatcaaatgaatgtgatcaatttgctgagaaattcactatttcaaatgcgtatgaag |
214 |
Q |
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| T |
6118446 |
tcacttatatataccaaagtcttttataaatttttaaacactctatcaaatgaatgtgatcaatttgctgagaaattcactatttcaaatgcgtatgaag |
6118545 |
T |
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| Q |
215 |
taatgtttttgtgttggatagtgaagaagccataactgtgtttgcaattacaagttctaactcgattattatttattgaaca |
296 |
Q |
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| T |
6118546 |
taatgtttttgtgttggatagtgaagaagccataactgtgtttgcaattacaagttctaactcgattattatttattgaaca |
6118627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 348 - 456
Target Start/End: Original strand, 6118678 - 6118786
Alignment:
| Q |
348 |
agaacttctatatcattttcgttctactgtctagcttttatatcactattctacgcagaactgaagtaggactagttcgatggcagcacattctaagatt |
447 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6118678 |
agaactttcatatcattttcgttctactgtctagcttttatatcactattctacacagaactgaagtaggactagttcgatggcagcacattctaagatt |
6118777 |
T |
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| Q |
448 |
tgcaagaat |
456 |
Q |
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||||||||| |
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| T |
6118778 |
tgcaagaat |
6118786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 2605742 - 2605793
Alignment:
| Q |
11 |
cagagaggacaaatgatataatttctaggttcttgtttggttttacatagat |
62 |
Q |
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| T |
2605742 |
cagagaggacaattgatataatttctaggtttttgtttggtttcacatagat |
2605793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 46852857 - 46852812
Alignment:
| Q |
202 |
aatgcgtatgaagtaatgtttttgtgttggatagtgaagaagccat |
247 |
Q |
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| T |
46852857 |
aatgagtatgaagtagtgtttttgtgttggatagtgaagaagccat |
46852812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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