View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_low_71 (Length: 251)
Name: NF0529_low_71
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_71 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 2920891 - 2920651
Alignment:
| Q |
11 |
cacagagcatagtagttttatatttgatcacacaacacaatatttcatacaaagccaatcaatgcaaacaacatatagctcaagataaattttttgaaga |
110 |
Q |
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| T |
2920891 |
cacaaagcatagtaattttatatttgatcacacaatacaatacttcatacaaagctaatgaatgcaaacaacatatagctcaagttaaaatgtttggaga |
2920792 |
T |
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| Q |
111 |
acacttgaacacacaacatatatatttatgttccacccgcttaataatattattccataagctagctcaaacgccacaataagtgcgcatagcaaattgg |
210 |
Q |
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| T |
2920791 |
acacttgaacacacaacatatatatttatggtccaccctcttaataatattattccataagctagctcaaacgccacaataagtgcgcatagcaaattgg |
2920692 |
T |
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| Q |
211 |
tctctttggcctttttcagtgtaataatacttgaggaattc |
251 |
Q |
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| T |
2920691 |
tccctttggcctttttcagtgtaataatacttgaggaattc |
2920651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 2935839 - 2935766
Alignment:
| Q |
11 |
cacagagcatagtagttttatatttgatcacacaaca-caatatttcatacaaagccaatcaatgcaaacaacatata |
87 |
Q |
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| T |
2935839 |
cacaaagcatagtagttttatatttgatcacacaacaccaatacttcttacaaag----tcaatacaaacaacatata |
2935766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 2935730 - 2935698
Alignment:
| Q |
108 |
agaacacttgaacacacaacatatatatttatg |
140 |
Q |
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| T |
2935730 |
agaacacttgaacacacaccatatatatttatg |
2935698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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