View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0529_low_75 (Length: 251)

Name: NF0529_low_75
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0529_low_75
NF0529_low_75
[»] chr1 (2 HSPs)
chr1 (108-239)||(30319853-30319985)
chr1 (1-51)||(30319732-30319782)


Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 108 - 239
Target Start/End: Original strand, 30319853 - 30319985
Alignment:
Q  108 aaatagaaagtctt-gtattatttacccattgctgatatgtaatttactaactagtgcaacttgttcactttagttttcattgatttgtttaagataaat 206  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30319853 aaatagaaagtctttgtattatttacccattgctgatatgtaatttactaactagtgcaacttgttcactttagttttcattgatttgtttaagataaat 30319952  T
Q  207 tgcaaatgttgaagaattctacgtaggtgttca 239  Q
    |||||||||||||||||||||||||||||||||    
T  30319953 tgcaaatgttgaagaattctacgtaggtgttca 30319985  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30319732 - 30319782
Alignment:
Q  1 cattgcatagatataattcttaaaaactagaacactttccttcctaaccat 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30319732 cattgcatagatataattcttaaaaactagaacactttccttcctaaccat 30319782  T

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