View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0529_low_76 (Length: 250)

Name: NF0529_low_76
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0529_low_76
NF0529_low_76
[»] chr1 (8 HSPs)
chr1 (1-195)||(40372585-40372778)
chr1 (12-119)||(52413891-52413996)
chr1 (12-125)||(14499662-14499774)
chr1 (1-116)||(18908233-18908345)
chr1 (71-129)||(28773082-28773139)
chr1 (212-242)||(40372516-40372546)
chr1 (101-129)||(8547241-8547269)
chr1 (101-129)||(8612480-8612508)
[»] chr7 (5 HSPs)
chr7 (12-119)||(32958171-32958277)
chr7 (12-119)||(38318949-38319055)
chr7 (74-119)||(40720365-40720410)
chr7 (70-122)||(46603691-46603743)
chr7 (14-55)||(41894741-41894782)
[»] chr8 (7 HSPs)
chr8 (12-110)||(24560004-24560101)
chr8 (14-117)||(34702672-34702775)
chr8 (12-119)||(30734920-30735025)
chr8 (83-124)||(4993355-4993396)
chr8 (12-52)||(11336757-11336797)
chr8 (70-122)||(43352074-43352126)
chr8 (70-118)||(159219-159267)
[»] chr4 (4 HSPs)
chr4 (12-119)||(32280360-32280467)
chr4 (80-119)||(45891763-45891802)
chr4 (94-127)||(26740730-26740763)
chr4 (80-120)||(52355975-52356015)
[»] chr5 (6 HSPs)
chr5 (12-118)||(37148801-37148910)
chr5 (12-119)||(4982453-4982558)
chr5 (74-127)||(19532092-19532145)
chr5 (14-55)||(30116968-30117009)
chr5 (67-119)||(523625-523677)
chr5 (92-128)||(21369101-21369137)
[»] chr6 (6 HSPs)
chr6 (74-130)||(26653416-26653472)
chr6 (74-130)||(26759384-26759440)
chr6 (80-126)||(9456310-9456356)
chr6 (70-119)||(6383301-6383350)
chr6 (12-53)||(24822616-24822657)
chr6 (12-53)||(33756057-33756098)
[»] chr3 (1 HSPs)
chr3 (14-117)||(9644519-9644621)
[»] chr2 (1 HSPs)
chr2 (15-55)||(35367885-35367925)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 40372778 - 40372585
Alignment:
Q  1 tttatatagagagtataaatgtttaaacttctgtgatgttgaatacacaattttcnnnnnnntatattttatctttagcttcttaatttatgccttaaga 100  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||| |        |||||||||||||| ||||||||||| | |||||||     
T  40372778 tttatatagaaagtataaatgtttaaacttttgtgatgttgaatacacaatttccaaaaaaa-atattttatctttaacttcttaatttgtaccttaagg 40372680  T
Q  101 gcacaagttaacatttcccataaaataataattttgtatccttcatcatcaatattaaaaggttgcaagtcaagcaaggtaatacaaacaatagg 195  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40372679 gcacaagttaacattttctataaaataataattttgtatccttcatcatcaatattaaaaggttgcaagtcaagcaaggtaatacaaacaatagg 40372585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 52413891 - 52413996
Alignment:
Q  12 agtataaatgtttaaacttctgtgatgttgaatacacaattttcnnnnnnntatattttatctttagcttcttaatttatgccttaagagcacaagttaa 111  Q
    |||||||||||| |||||| ||||| |||||||||||||||| |        ||||| ||||||||||||||||| || ||||||||| |||||||||||    
T  52413891 agtataaatgttcaaacttttgtgaagttgaatacacaatttccaaaaaa--atattctatctttagcttcttaacttgtgccttaagggcacaagttaa 52413988  T
Q  112 catttccc 119  Q
    ||||||||    
T  52413989 catttccc 52413996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 14499662 - 14499774
Alignment:
Q  12 agtataaatgtttaaacttctgtgatgttgaatacacaattttcnnnnnnntatattttatctttagcttcttaatttatgccttaagagcacaagttaa 111  Q
    ||||||||| |||||| || ||| || |||||||||||||||||       || ||| |||||||| ||| |||| || ||| ||||| |||||||||||    
T  14499662 agtataaatatttaaagttttgtaatattgaatacacaattttcaaatatata-attctatctttaacttgttaacttgtgcgttaagggcacaagttaa 14499760  T
Q  112 catttcccataaaa 125  Q
    ||||||||||||||    
T  14499761 catttcccataaaa 14499774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 18908233 - 18908345
Alignment:
Q  1 tttatatagagagtataaatgtttaaacttctgtgatgttgaatacacaattttcnnnnnnntatattttatctttagcttcttaatttatgccttaaga 100  Q
    ||||||| || ||||||||||||||||||| ||||| |||||||||||| ||||          |||||||| ||||||||||||| ||  ||||||||     
T  18908233 tttatattgaaagtataaatgtttaaacttttgtgaagttgaatacacatttttaaaaagat--tattttatatttagcttcttaactt-ggccttaagg 18908329  T
Q  101 gcacaagttaacattt 116  Q
    ||||||||||||||||    
T  18908330 gcacaagttaacattt 18908345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 28773082 - 28773139
Alignment:
Q  71 atctttagcttcttaatttatgccttaagagcacaagttaacatttcccataaaataat 129  Q
    ||||||||||| |||| || ||||||||| |||||||||| |||||||| |||||||||    
T  28773082 atctttagctttttaacttgtgccttaagggcacaagttagcatttccc-taaaataat 28773139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 242
Target Start/End: Complemental strand, 40372546 - 40372516
Alignment:
Q  212 taattgaaaagttgtcttcagtggcctatga 242  Q
    |||||||||||||||||||||||||||||||    
T  40372546 taattgaaaagttgtcttcagtggcctatga 40372516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 129
Target Start/End: Complemental strand, 8547269 - 8547241
Alignment:
Q  101 gcacaagttaacatttcccataaaataat 129  Q
    |||||||||||||||||||||||||||||    
T  8547269 gcacaagttaacatttcccataaaataat 8547241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 129
Target Start/End: Complemental strand, 8612508 - 8612480
Alignment:
Q  101 gcacaagttaacatttcccataaaataat 129  Q
    |||||||||||||||||||||||||||||    
T  8612508 gcacaagttaacatttcccataaaataat 8612480  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 32958277 - 32958171
Alignment:
Q  12 agtataaatgtttaaacttctgtgatgttgaatacacaattttcnnnnnnntatattttatctttagcttcttaatttatgccttaagagcacaagttaa 111  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||       | | |||||||||||||||||||| || ||||||||| | |||||||||    
T  32958277 agtataaatgtttaaacttttgtgatgttgaatacacaa-tttccaaatttttttttttatctttagcttcttaacttgtgccttaagggtacaagttaa 32958179  T
Q  112 catttccc 119  Q
    ||||||||    
T  32958178 catttccc 32958171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 38319055 - 38318949
Alignment:
Q  12 agtataaatgtttaaacttctgtgatgttgaatacacaattttcnnnnnnntatattttatctttagcttcttaatttatgccttaagagcacaagttaa 111  Q
    ||||||||||||||||||| ||||||||| ||| |||||||| |       | |||| ||||||||||||||||| || |||||||||  ||||||||||    
T  38319055 agtataaatgtttaaacttttgtgatgttaaatgcacaatttccaaaaatat-tattctatctttagcttcttaacttgtgccttaaggacacaagttaa 38318957  T
Q  112 catttccc 119  Q
    ||||||||    
T  38318956 catttccc 38318949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 40720410 - 40720365
Alignment:
Q  74 tttagcttcttaatttatgccttaagagcacaagttaacatttccc 119  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||    
T  40720410 tttagcttcttaatttatgccccaagcgcacaagttaacatttccc 40720365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 46603743 - 46603691
Alignment:
Q  70 tatctttagcttcttaatttatgccttaagagcacaagttaacatttcccata 122  Q
    ||||||||| ||||||| || ||||||||| |||||||||| |||||||||||    
T  46603743 tatctttagtttcttaacttttgccttaagggcacaagttagcatttcccata 46603691  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 41894741 - 41894782
Alignment:
Q  14 tataaatgtttaaacttctgtgatgttgaatacacaattttc 55  Q
    |||||||| |||||| | ||||||||||||||||||||||||    
T  41894741 tataaatgattaaacatttgtgatgttgaatacacaattttc 41894782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 24560101 - 24560004
Alignment:
Q  12 agtataaatgtttaaacttctgtgatgttgaatacacaattttcnnnnnnntatattttatctttagcttcttaatttatgccttaagagcacaagtta 110  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||       || ||| ||||||||||||||||| || ||||||||| ||||||||||    
T  24560101 agtataaatgtttaaacttttgtaatgttgaatacacaattttcaaaaaaata-attctatctttagcttcttaacttgtgccttaagggcacaagtta 24560004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 34702775 - 34702672
Alignment:
Q  14 tataaatgtttaaacttctgtgatgttgaatacacaattttcnnnnnnntatattttatctttagcttcttaatttatgccttaagagcacaagttaaca 113  Q
    ||||||||||||||||| |||||||||||||||| |||||||        | |  | ||||||| |||||||| || ||||||||| |||||||||||||    
T  34702775 tataaatgtttaaacttttgtgatgttgaatacaaaattttcaaaaaaaaaaaaatcatctttaacttcttaacttgtgccttaagggcacaagttaaca 34702676  T
Q  114 tttc 117  Q
    ||||    
T  34702675 tttc 34702672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 30734920 - 30735025
Alignment:
Q  12 agtataaatgtttaaacttctgtgatgttgaatacacaattttcnnnnnnntatattttatctttagcttcttaatttatgccttaagagcacaagttaa 111  Q
    ||||||||||||||||||| ||||| |||||||||||||||| |         |||| |||||| |||||||||| |||||||||||  |||||| ||||    
T  30734920 agtataaatgtttaaacttttgtgaagttgaatacacaatttccaaaaaat--tattctatcttcagcttcttaacttatgccttaaaggcacaaattaa 30735017  T
Q  112 catttccc 119  Q
     |||||||    
T  30735018 gatttccc 30735025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 4993355 - 4993396
Alignment:
Q  83 ttaatttatgccttaagagcacaagttaacatttcccataaa 124  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  4993355 ttaacttatgccttaagagcacaaattaacatttcccataaa 4993396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 11336757 - 11336797
Alignment:
Q  12 agtataaatgtttaaacttctgtgatgttgaatacacaatt 52  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  11336757 agtataaatgattaaacttttgtgatgttgaatacacaatt 11336797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 43352074 - 43352126
Alignment:
Q  70 tatctttagcttcttaatttatgccttaagagcacaagttaacatttcccata 122  Q
    |||||||||||| | || |||||||||||| |||||||||| |||||||||||    
T  43352074 tatctttagcttttgaacttatgccttaagggcacaagttagcatttcccata 43352126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 159219 - 159267
Alignment:
Q  70 tatctttagcttcttaatttatgccttaagagcacaagttaacatttcc 118  Q
    ||||||||| || |||| ||||| |||||| ||||||||||||||||||    
T  159219 tatctttagttttttaacttatgtcttaagggcacaagttaacatttcc 159267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 32280360 - 32280467
Alignment:
Q  12 agtataaatgtttaaacttctgtgatgttgaatacacaattttcnnnnnnntatattttatctttagcttcttaatttatgccttaagagcacaagttaa 111  Q
    ||||||||||||||||||| ||||||||||||| || |||||||        ||||| ||| |||  |||||||| ||||| |||||| |||||||||||    
T  32280360 agtataaatgtttaaacttttgtgatgttgaatgcataattttcaaaaaaaaatattctatatttgacttcttaacttatgtcttaagggcacaagttaa 32280459  T
Q  112 catttccc 119  Q
    ||||||||    
T  32280460 catttccc 32280467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 45891802 - 45891763
Alignment:
Q  80 ttcttaatttatgccttaagagcacaagttaacatttccc 119  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  45891802 ttcttaacttgtgccttaagagcacaagttaacatttccc 45891763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 26740763 - 26740730
Alignment:
Q  94 cttaagagcacaagttaacatttcccataaaata 127  Q
    |||||||||||||||||||||||||| |||||||    
T  26740763 cttaagagcacaagttaacatttcccttaaaata 26740730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 52355975 - 52356015
Alignment:
Q  80 ttcttaatttatgccttaagagcacaagttaacatttccca 120  Q
    ||||||| |||||||| ||| ||||||||||||||||||||    
T  52355975 ttcttaacttatgcctcaagggcacaagttaacatttccca 52356015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 37148801 - 37148910
Alignment:
Q  12 agtataaatgtttaaacttctgtgatgttgaatacacaattt-tcnnnnnnntatattttatctttagcttcttaatttatgccttaaga--gcacaagt 108  Q
    ||||||||||||||||||| ||||||||||||| ||||||||  |       |||||||||||||||||||||||| || ||| ||||||  ||||||||    
T  37148801 agtataaatgtttaaacttttgtgatgttgaatgcacaatttcccaaaaaaatatattttatctttagcttcttaacttgtgctttaagagcgcacaagt 37148900  T
Q  109 taacatttcc 118  Q
    ||| ||||||    
T  37148901 taatatttcc 37148910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 4982558 - 4982453
Alignment:
Q  12 agtataaatgtttaaacttctgtgatgttgaatacacaattttcnnnnnnntatattttatctttagcttcttaatttatgccttaagagcacaagttaa 111  Q
    ||||||||||||||||||| | ||||||||||| |||||||| |        ||||| |||||||||||| |||| || ||| ||||| |||||||||||    
T  4982558 agtataaatgtttaaacttttatgatgttgaatgcacaatttccaaaaaa--atattctatctttagctttttaacttgtgctttaagggcacaagttaa 4982461  T
Q  112 catttccc 119  Q
    ||||||||    
T  4982460 catttccc 4982453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 19532092 - 19532145
Alignment:
Q  74 tttagcttcttaatttatgccttaagagcacaagttaacatttcccataaaata 127  Q
    |||||||| |||| ||  ||||| |||||||||||||||||||||| |||||||    
T  19532092 tttagctttttaacttgagccttgagagcacaagttaacatttcccttaaaata 19532145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 30117009 - 30116968
Alignment:
Q  14 tataaatgtttaaacttctgtgatgttgaatacacaattttc 55  Q
    ||||||||||||||||| |||  |||||||||||||||||||    
T  30117009 tataaatgtttaaacttttgtagtgttgaatacacaattttc 30116968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 523677 - 523625
Alignment:
Q  67 ttttatctttagcttcttaatttatgccttaagagcacaagttaacatttccc 119  Q
    |||||| ||| |||||| || || ||||||||| |||||||||||||||||||    
T  523677 ttttatatttggcttctaaacttgtgccttaagggcacaagttaacatttccc 523625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 21369137 - 21369101
Alignment:
Q  92 gccttaagagcacaagttaacatttcccataaaataa 128  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  21369137 gccttaagggcacaagttaacatttcccataagataa 21369101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 26653416 - 26653472
Alignment:
Q  74 tttagcttcttaatttatgccttaagagcacaagttaacatttcccataaaataata 130  Q
    |||||||||||||||||||||  | |||||||||||||||||||||| || ||||||    
T  26653416 tttagcttcttaatttatgccacaggagcacaagttaacatttcccaaaatataata 26653472  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 26759384 - 26759440
Alignment:
Q  74 tttagcttcttaatttatgccttaagagcacaagttaacatttcccataaaataata 130  Q
    |||||||||||||||||||||  | |||||||||||||||||||||| || ||||||    
T  26759384 tttagcttcttaatttatgccacaggagcacaagttaacatttcccaaaatataata 26759440  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 9456310 - 9456356
Alignment:
Q  80 ttcttaatttatgccttaagagcacaagttaacatttcccataaaat 126  Q
    ||||||||||||||||| || |||||||||||||||| || ||||||    
T  9456310 ttcttaatttatgccttgagggcacaagttaacattttccttaaaat 9456356  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 6383350 - 6383301
Alignment:
Q  70 tatctttagcttcttaatttatgccttaagagcacaagttaacatttccc 119  Q
    |||||||||||| | || |||||||||||| |||||||||| ||||||||    
T  6383350 tatctttagcttttgaacttatgccttaagggcacaagttagcatttccc 6383301  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 24822616 - 24822657
Alignment:
Q  12 agtataaatgtttaaacttctgtgatgttgaatacacaattt 53  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||    
T  24822616 agtataaatatttaaacttttgtgatgttgaatgcacaattt 24822657  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 33756057 - 33756098
Alignment:
Q  12 agtataaatgtttaaacttctgtgatgttgaatacacaattt 53  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||    
T  33756057 agtataaatgtttcaacttttgtaatgttgaatacacaattt 33756098  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 9644519 - 9644621
Alignment:
Q  14 tataaatgtttaaacttctgtgatgttgaatacacaattttcnnnnnnntatattttatctttagcttcttaatttatgccttaagagcacaagttaaca 113  Q
    ||||||||||||||||  ||| ||||||||||||||||||||       || ||||||| |||| ||  |||| |  ||||||||| |||||||||||||    
T  9644519 tataaatgtttaaactgttgtaatgttgaatacacaattttcaaaaaaata-attttatttttaactctttaactcgtgccttaagggcacaagttaaca 9644617  T
Q  114 tttc 117  Q
    ||||    
T  9644618 tttc 9644621  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 35367925 - 35367885
Alignment:
Q  15 ataaatgtttaaacttctgtgatgttgaatacacaattttc 55  Q
    |||||||||||||||| | | ||||||||||||||||||||    
T  35367925 ataaatgtttaaacttttataatgttgaatacacaattttc 35367885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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