View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0529_low_78 (Length: 248)

Name: NF0529_low_78
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0529_low_78
NF0529_low_78
[»] chr2 (1 HSPs)
chr2 (53-207)||(36277746-36277900)
[»] chr8 (3 HSPs)
chr8 (58-109)||(28979021-28979072)
chr8 (57-111)||(14011086-14011140)
chr8 (65-111)||(18123853-18123899)
[»] chr4 (3 HSPs)
chr4 (58-117)||(36045817-36045876)
chr4 (59-93)||(9302693-9302727)
chr4 (58-110)||(30615991-30616044)
[»] chr5 (6 HSPs)
chr5 (56-109)||(35813289-35813342)
chr5 (58-110)||(13862119-13862171)
chr5 (59-110)||(42553190-42553241)
chr5 (64-110)||(28537129-28537175)
chr5 (65-110)||(3535992-3536037)
chr5 (64-104)||(41405143-41405183)
[»] chr6 (7 HSPs)
chr6 (62-110)||(9443516-9443564)
chr6 (59-110)||(8175990-8176041)
chr6 (57-110)||(10455736-10455789)
chr6 (58-115)||(30833006-30833063)
chr6 (57-110)||(34524869-34524922)
chr6 (57-109)||(12341416-12341468)
chr6 (57-109)||(31639136-31639188)
[»] chr1 (6 HSPs)
chr1 (64-112)||(24119298-24119346)
chr1 (55-110)||(7906372-7906427)
chr1 (54-107)||(7015732-7015785)
chr1 (57-110)||(18003810-18003863)
chr1 (57-110)||(52961130-52961183)
chr1 (58-110)||(9768858-9768910)
[»] scaffold0168 (1 HSPs)
scaffold0168 (57-110)||(34081-34134)
[»] chr3 (2 HSPs)
chr3 (57-110)||(16874238-16874291)
chr3 (58-106)||(3461773-3461821)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 53 - 207
Target Start/End: Original strand, 36277746 - 36277900
Alignment:
Q  53 ttcagcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggacgtaatttgtaattttttaaagttgtctattatagacatttgt 152  Q
    |||| ||||||||||||||||||||||||| || ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36277746 ttcaacccctacatataacaatgcatgtcactgccaactgagctatgctcacggggacgtaatttgtaattttttaaagttgtctattatagacatttgt 36277845  T
Q  153 tccgttaaaatatgagttattgaaagnnnnnnnnnctaaattaattgaagtgtaa 207  Q
    ||||||||||||||||||||||||||         ||||||||||||||||||||    
T  36277846 tccgttaaaatatgagttattgaaagcaaaaaaaactaaattaattgaagtgtaa 36277900  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 28979072 - 28979021
Alignment:
Q  58 cccctacatataacaatgcatgtcagtgtcaattgaactatgctcacgggga 109  Q
    ||||||||||||||||||||||||  | |||| |||||||||||||||||||    
T  28979072 cccctacatataacaatgcatgtccctatcaactgaactatgctcacgggga 28979021  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 14011086 - 14011140
Alignment:
Q  57 gcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggacg 111  Q
    |||||| ||||||||||||||||||  || ||| |||||||||||||| ||||||    
T  14011086 gcccctgcatataacaatgcatgtccctgccaactgaactatgctcacagggacg 14011140  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 18123899 - 18123853
Alignment:
Q  65 atataacaatgcatgtcagtgtcaattgaactatgctcacggggacg 111  Q
    ||||||||||| || ||  ||||||||||||||||||||||||||||    
T  18123899 atataacaatgtatatccctgtcaattgaactatgctcacggggacg 18123853  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 36045876 - 36045817
Alignment:
Q  58 cccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggacgtaattt 117  Q
    ||||| ||||||||||||||||||  |||||||||| |||||||||| ||||| ||||||    
T  36045876 cccctgcatataacaatgcatgtccctgtcaattgagctatgctcactgggacataattt 36045817  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 93
Target Start/End: Original strand, 9302693 - 9302727
Alignment:
Q  59 ccctacatataacaatgcatgtcagtgtcaattga 93  Q
    ||||||||||||||||||||||| |||||||||||    
T  9302693 ccctacatataacaatgcatgtccgtgtcaattga 9302727  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 30616044 - 30615991
Alignment:
Q  58 cccctacatataacaatgcat-gtcagtgtcaattgaactatgctcacggggac 110  Q
    ||||| ||||||||||||||| |||  |||||||||| ||||||||||||||||    
T  30616044 cccctgcatataacaatgcattgtccatgtcaattgagctatgctcacggggac 30615991  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 35813289 - 35813342
Alignment:
Q  56 agcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacgggga 109  Q
    ||||||| ||||||||||||||||||  |||||| ||| |||||||||||||||    
T  35813289 agcccctgcatataacaatgcatgtccctgtcaactgagctatgctcacgggga 35813342  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 13862171 - 13862119
Alignment:
Q  58 cccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 110  Q
    ||||| ||||||||||||||| ||  |||||| ||||||||||||||||||||    
T  13862171 cccctgcatataacaatgcatatccatgtcaactgaactatgctcacggggac 13862119  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 42553190 - 42553241
Alignment:
Q  59 ccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 110  Q
    |||| ||||||||||||||||||  |||||| ||| ||||||||||||||||    
T  42553190 ccctgcatataacaatgcatgtcgttgtcaactgagctatgctcacggggac 42553241  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 28537175 - 28537129
Alignment:
Q  64 catataacaatgcatgtcagtgtcaattgaactatgctcacggggac 110  Q
    ||||||||||||||||||  ||||||||||  |||||||||||||||    
T  28537175 catataacaatgcatgtccatgtcaattgagttatgctcacggggac 28537129  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 3535992 - 3536037
Alignment:
Q  65 atataacaatgcatgtcagtgtcaattgaactatgctcacggggac 110  Q
    |||||||||||||||||  || ||| ||||||||||||||||||||    
T  3535992 atataacaatgcatgtccctgccaactgaactatgctcacggggac 3536037  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 41405143 - 41405183
Alignment:
Q  64 catataacaatgcatgtcagtgtcaattgaactatgctcac 104  Q
    ||||||||||||||||||  |||||| ||||||||||||||    
T  41405143 catataacaatgcatgtccctgtcaactgaactatgctcac 41405183  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 9443516 - 9443564
Alignment:
Q  62 tacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 110  Q
    |||||||||||||||||||| || |||| ||| ||||||||||||||||    
T  9443516 tacatataacaatgcatgtccgtatcaactgagctatgctcacggggac 9443564  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 8176041 - 8175990
Alignment:
Q  59 ccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 110  Q
    |||| ||||||||||||||||||  |||||| ||| ||||||||||||||||    
T  8176041 ccctgcatataacaatgcatgtctctgtcaactgagctatgctcacggggac 8175990  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 10455789 - 10455736
Alignment:
Q  57 gcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 110  Q
    |||||| |||||||||||||||||   || ||| ||||||||||||||||||||    
T  10455789 gcccctgcatataacaatgcatgttcctgccaactgaactatgctcacggggac 10455736  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 30833063 - 30833006
Alignment:
Q  58 cccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggacgtaat 115  Q
    ||||| ||||||||||||||||||  || ||| ||||||||||||| |||||| ||||    
T  30833063 cccctgcatataacaatgcatgtccctgccaactgaactatgctcatggggacttaat 30833006  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 34524922 - 34524869
Alignment:
Q  57 gcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 110  Q
    |||||| ||||||||||||||||||  || ||| ||| ||||||||||||||||    
T  34524922 gcccctgcatataacaatgcatgtccctgccaactgagctatgctcacggggac 34524869  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 12341468 - 12341416
Alignment:
Q  57 gcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacgggga 109  Q
    |||||||||||||| |||| ||||   |||||| |||||||||||||||||||    
T  12341468 gcccctacatataataatgtatgttcctgtcaactgaactatgctcacgggga 12341416  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 31639188 - 31639136
Alignment:
Q  57 gcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacgggga 109  Q
    |||||||||||||||||||| ||||  |||||| |||  ||||||||||||||    
T  31639188 gcccctacatataacaatgcgtgtccctgtcaactgagttatgctcacgggga 31639136  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 24119346 - 24119298
Alignment:
Q  64 catataacaatgcatgtcagtgtcaattgaactatgctcacggggacgt 112  Q
    ||||||||||||||||||  |||||| ||||||||| ||||||||||||    
T  24119346 catataacaatgcatgtccttgtcaactgaactatgttcacggggacgt 24119298  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 7906372 - 7906427
Alignment:
Q  55 cagcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 110  Q
    |||||||| ||||||||||||||||||  |  ||| ||||||||||||||||||||    
T  7906372 cagcccctgcatataacaatgcatgtccctaccaactgaactatgctcacggggac 7906427  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 7015732 - 7015785
Alignment:
Q  54 tcagcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggg 107  Q
    ||||||||||||||||||||||||||||   | ||| ||| |||||||||||||    
T  7015732 tcagcccctacatataacaatgcatgtcccagccaactgagctatgctcacggg 7015785  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 18003863 - 18003810
Alignment:
Q  57 gcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 110  Q
    |||||| ||||||||||||||||||  || ||| ||| ||||||||||||||||    
T  18003863 gcccctgcatataacaatgcatgtccctgccaactgagctatgctcacggggac 18003810  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 52961130 - 52961183
Alignment:
Q  57 gcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 110  Q
    |||||| ||||||||||||||||||  || ||| ||| ||||||||||||||||    
T  52961130 gcccctgcatataacaatgcatgtccttgccaactgagctatgctcacggggac 52961183  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 9768858 - 9768910
Alignment:
Q  58 cccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 110  Q
    ||||| ||||||||||||||||||  || ||| ||| ||||||||||||||||    
T  9768858 cccctgcatataacaatgcatgtccctgccaactgagctatgctcacggggac 9768910  T

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Target: scaffold0168 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 34081 - 34134
Alignment:
Q  57 gcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 110  Q
    |||||| ||||||||||||||||||  || ||| ||| ||||||||||||||||    
T  34081 gcccctgcatataacaatgcatgtccctgccaactgagctatgctcacggggac 34134  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 16874238 - 16874291
Alignment:
Q  57 gcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 110  Q
    |||||| ||||||||||||||||||  || ||| ||| ||||||||||||||||    
T  16874238 gcccctgcatataacaatgcatgtccctgccaactgagctatgctcacggggac 16874291  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 3461773 - 3461821
Alignment:
Q  58 cccctacatataacaatgcatgtcagtgtcaattgaactatgctcacgg 106  Q
    ||||||||||||||||||||||||  |||||| |||  |||||||||||    
T  3461773 cccctacatataacaatgcatgtccctgtcaactgagttatgctcacgg 3461821  T

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