View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0529_low_79 (Length: 248)
Name: NF0529_low_79
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_79 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 851583 - 851345
Alignment:
| Q |
10 |
aagaatatcactatcaaccaaaccattcttaatcaaaagtgcatgagtcttcaacccttgataaaacgcaggagcggccgcaaaactcttaataacactc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
851583 |
aagaatatcactatcaaccaaaccattcttaatcaaaagtgcatgagtcttcaacccttgataaaacgcgggtgcggccgcaaaactcttaataacactc |
851484 |
T |
|
| Q |
110 |
gaaaaactataaacattcaactcaacccctaattccctcattttcgaataagtcttaaccacatcaatatactgctttttcctaccaccaaaaaccacag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
851483 |
gaaaaactataaacattcaactcaacccctaattccctcattttcgaataagtcttaaccacatcaatatactgctttttcctaccaccaaaaaccacag |
851384 |
T |
|
| Q |
210 |
ttcctctcaacaaagcattccacggatacacactactct |
248 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
851383 |
tccctctcaacaaagcattccacggatacacactactct |
851345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 345 times since January 2019
Visitors: 3649