View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0529_low_8 (Length: 534)

Name: NF0529_low_8
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0529_low_8
NF0529_low_8
[»] chr5 (4 HSPs)
chr5 (111-425)||(31692596-31692910)
chr5 (426-524)||(31692470-31692568)
chr5 (333-425)||(16685775-16685867)
chr5 (426-489)||(16685684-16685747)
[»] chr8 (1 HSPs)
chr8 (114-198)||(33027850-33027934)
[»] chr2 (2 HSPs)
chr2 (111-152)||(24101661-24101702)
chr2 (111-195)||(600540-600623)
[»] scaffold0727 (1 HSPs)
scaffold0727 (111-198)||(4810-4897)
[»] chr4 (1 HSPs)
chr4 (111-198)||(23552689-23552776)
[»] chr3 (1 HSPs)
chr3 (111-176)||(548359-548423)
[»] scaffold1063 (1 HSPs)
scaffold1063 (199-231)||(30-62)
[»] chr1 (2 HSPs)
chr1 (111-195)||(2427230-2427314)
chr1 (161-197)||(25515711-25515747)


Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-141; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 111 - 425
Target Start/End: Complemental strand, 31692910 - 31692596
Alignment:
Q  111 agttagttagtgcctataaataggcttgaggtagttaaattggaaccaactttctcatttgtaatactactcattactatcaatacaaagttacaagttt 210  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31692910 agttagttagtgcctataaataggtttgaggtagttaaattgtaaccaactttctcatttgcaatactactcattactatcaatacaaagttacaagttt 31692811  T
Q  211 tctctctactttttcatggattccatgtttcatatcatgatatcaaagttactatggtatatccaccttgaaggaattttccactacgttttcttaaagn 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||     
T  31692810 tctctctactttttcatggattccatgtttcatatcatgatatcaaagttactatgg--tatccaccttgaaggaattttccactgcgttttcttaaaga 31692713  T
Q  311 nnnnnnnttctcatcgtttaga--tctctcaattcttttaccttaattgttcatttttccttaaatttcttctcatgcaattcgttcttgattctgttat 408  Q
           |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31692712 aaaaaaattctcatcgtttagatttctctcaattcttttaccttaattgttcatttttccttaaatttcttctcatgcaattcgttcttgattctgttat 31692613  T
Q  409 aatctcaatttgagatt 425  Q
    |||||||||||||||||    
T  31692612 aatctcaatttgagatt 31692596  T

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Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 426 - 524
Target Start/End: Complemental strand, 31692568 - 31692470
Alignment:
Q  426 agtatttcaatttggagcaagaaacttttggattcgatgttgtttccattcaagttcttgagtttgtttttgtcattttgtgcaatctctttgttcatc 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31692568 agtatttcaatttggagcaagaaacttttggattcgatgttgtttccattcaagttcttgagtttgtttttgtcattttgtgcaatctctttgttcatc 31692470  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 333 - 425
Target Start/End: Complemental strand, 16685867 - 16685775
Alignment:
Q  333 tctctcaattcttttaccttaattgttcatttttccttaaatttcttctcatgcaattcgttcttgattctgttataatctcaatttgagatt 425  Q
    ||||||||||||||  |||| |||||||||||||||||||| |||||||||||||||| |||||||||| ||| |||||||||||||||||||    
T  16685867 tctctcaattctttctccttcattgttcatttttccttaaagttcttctcatgcaatttgttcttgattttgtaataatctcaatttgagatt 16685775  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 489
Target Start/End: Complemental strand, 16685747 - 16685684
Alignment:
Q  426 agtatttcaatttggagcaagaaacttttggattcgatgttgtttccattcaagttcttgagtt 489  Q
    ||||||||||  |||||||||||||||| | |||  ||||||||||  ||||||||||||||||    
T  16685747 agtatttcaacctggagcaagaaactttggaatttaatgttgtttctgttcaagttcttgagtt 16685684  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 33027934 - 33027850
Alignment:
Q  114 tagttagtgcctataaataggcttgaggtagttaaattggaaccaactttctcatttgtaatactactcattactatcaatacaa 198  Q
    |||||||||| |||| ||||||||||||||||||||||| ||| ||||| ||||||||||  | |||||||||  ||||||||||    
T  33027934 tagttagtgcttatagataggcttgaggtagttaaattgtaactaacttcctcatttgtacaattactcattatcatcaatacaa 33027850  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 24101702 - 24101661
Alignment:
Q  111 agttagttagtgcctataaataggcttgaggtagttaaattg 152  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  24101702 agttagttagtgcctataaataggcttgaggtagtcaaattg 24101661  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 195
Target Start/End: Complemental strand, 600623 - 600540
Alignment:
Q  111 agttagttagtgcctataaataggcttgaggtagttaaattggaaccaactttctcatttgtaatactactcattactatcaata 195  Q
    ||||||||||||||||||||||||||| |||| || | |||| ||| |||||| ||| |||||||| || ||||| | |||||||    
T  600623 agttagttagtgcctataaataggcttaaggt-gtcacattgtaactaactttgtcaattgtaataatattcatttccatcaata 600540  T

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Target: scaffold0727 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 4897 - 4810
Alignment:
Q  111 agttagttagtgcctataaataggcttgaggtagttaaattggaaccaactttctcatttgtaatactactcattactatcaatacaa 198  Q
    ||||||||| || |||||||||| |||||| ||||||||||| ||| |||||  |||||| |||||| |||||||   ||||||||||    
T  4897 agttagttaatgtctataaatagacttgagttagttaaattgtaactaacttcttcatttataataccactcattctcatcaatacaa 4810  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 23552776 - 23552689
Alignment:
Q  111 agttagttagtgcctataaataggcttgaggtagttaaattggaaccaactttctcatttgtaatactactcattactatcaatacaa 198  Q
    ||||||||| || |||||||||| |||||| ||||||||||| ||| |||||  |||||| |||||| |||||||   ||||||||||    
T  23552776 agttagttaatgtctataaatagacttgagttagttaaattgtaactaacttcttcatttataataccactcattctcatcaatacaa 23552689  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 548359 - 548423
Alignment:
Q  111 agttagttagtgcctataaataggcttgaggtagttaaattggaaccaactttctcatttgtaata 176  Q
    ||||||||||||||||||||||||||| ||||| | | || | ||| |||||||||||||||||||    
T  548359 agttagttagtgcctataaataggcttaaggta-tcacatagtaactaactttctcatttgtaata 548423  T

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Target: scaffold1063 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 62 - 30
Alignment:
Q  199 agttacaagttttctctctactttttcatggat 231  Q
    |||||||||||||||||||||||||||||||||    
T  62 agttacaagttttctctctactttttcatggat 30  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 2427230 - 2427314
Alignment:
Q  111 agttagttagtgcctataaataggcttgaggtagttaaattggaaccaac-tttctcatttgtaatactactcattactatcaata 195  Q
    ||||||||||||||||||||||||||| |||| || | |||| ||||||| |||| || |||||||| || ||||| | |||||||    
T  2427230 agttagttagtgcctataaataggcttaaggt-gtcacattgtaaccaacttttcccaattgtaataatattcatttccatcaata 2427314  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 25515711 - 25515747
Alignment:
Q  161 tttctcatttgtaatactactcattactatcaataca 197  Q
    |||||||||||||||||||||||||  ||||||||||    
T  25515711 tttctcatttgtaatactactcattcttatcaataca 25515747  T

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