View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0529_low_83 (Length: 244)
Name: NF0529_low_83
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_low_83 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 25304488 - 25304630
Alignment:
| Q |
22 |
acatatgtcccttcaacttaatatcagacaaatcacaatcgttaacgtcttcacaaaatccattacacaaccaatttggatgtgcatggactccaagctt |
121 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25304488 |
acatatgtcccttcagcttaatatcagacaaatcacaatcgttaacatcttcacaaaatccattacacaaccaatttggatgtgcatggactcgaagctt |
25304587 |
T |
|
| Q |
122 |
atcttgttgagatacaacatcattaaagtcttatatgatacac |
164 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25304588 |
atcttgttgagatacaaggtcattaaagtcttatatgatacac |
25304630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 25306101 - 25306182
Alignment:
| Q |
163 |
accaaggaaagtctcctttaccggcacaaccttcatcagccgccacacttcaggcatacacaccttcatgggtttcatctta |
244 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25306101 |
accaaggaaagtctcctttactgccacaaccttcatcatccgccacacttcaggcatacacaccttcatgggtttcatctta |
25306182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 157 times since January 2019
Visitors: 3647