View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0529_low_84 (Length: 244)

Name: NF0529_low_84
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0529_low_84
NF0529_low_84
[»] chr7 (4 HSPs)
chr7 (157-244)||(31166547-31166634)
chr7 (165-244)||(21971973-21972052)
chr7 (49-92)||(21972125-21972167)
chr7 (55-93)||(31166445-31166483)
[»] chr3 (3 HSPs)
chr3 (165-244)||(23566562-23566641)
chr3 (157-244)||(39737325-39737411)
chr3 (55-93)||(39737223-39737261)
[»] chr2 (6 HSPs)
chr2 (157-244)||(39864892-39864979)
chr2 (157-238)||(29771186-29771267)
chr2 (188-244)||(4330020-4330076)
chr2 (55-93)||(29771331-29771369)
chr2 (55-93)||(4330168-4330206)
chr2 (55-93)||(39864790-39864828)
[»] chr4 (3 HSPs)
chr4 (157-232)||(12639305-12639380)
chr4 (157-244)||(28104241-28104328)
chr4 (157-225)||(919015-919083)
[»] chr8 (2 HSPs)
chr8 (157-244)||(147085-147172)
chr8 (55-93)||(26759660-26759698)


Alignment Details
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 31166547 - 31166634
Alignment:
Q  157 ttctttcttttacacagttaaataccacacacgcgtgtgcttctcattctttttctttgtgatttcaattttggaaatcattcccatt 244  Q
    ||||||| ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  31166547 ttctttcctttacacagttaaataccacacgagcgcgtgcttctcattctttttctttgtgattttaatttcggaaatcattcccatt 31166634  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 21972052 - 21971973
Alignment:
Q  165 tttacacagttaaataccacacacgcgtgtgcttctcattctttttctttgtgatttcaattttggaaatcattcccatt 244  Q
    |||||| ||||||||||||||| |||  ||||||||||||||||| ||||||||||||||||| |||||||||| |||||    
T  21972052 tttacatagttaaataccacacgcgctcgtgcttctcattcttttcctttgtgatttcaatttcggaaatcatttccatt 21971973  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 21972167 - 21972125
Alignment:
Q  49 caattaaatatgcattcaataaatgaatctcacttaattcatct 92  Q
    |||||||| ||||||| |||||||||||||||||||||||||||    
T  21972167 caattaaa-atgcattaaataaatgaatctcacttaattcatct 21972125  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 31166445 - 31166483
Alignment:
Q  55 aatatgcattcaataaatgaatctcacttaattcatctc 93  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  31166445 aatatgcattaaataaatgaatctcatttaattcatctc 31166483  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 23566562 - 23566641
Alignment:
Q  165 tttacacagttaaataccacacacgcgtgtgcttctcattctttttctttgtgatttcaattttggaaatcattcccatt 244  Q
    ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23566562 tttacacagttaaataccacacgagcgcgtgcttctcattctttttctttgtgatttcaatttcggaaatcattcccatt 23566641  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 39737325 - 39737411
Alignment:
Q  157 ttctttcttttacacagttaaataccacacacgcgtgtgcttctcattctttttctttgtgatttcaattttggaaatcattcccatt 244  Q
    ||||||| |||||||| ||||||| ||||| | ||  ||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  39737325 ttctttcctttacacatttaaatatcacacgcacgcatgcttctcattcttttt-tttgtgatttcaatttcggaaatcattcccatt 39737411  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 39737223 - 39737261
Alignment:
Q  55 aatatgcattcaataaatgaatctcacttaattcatctc 93  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  39737223 aatatgcattaaataaatgaatctcacttaatccatctc 39737261  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 39864892 - 39864979
Alignment:
Q  157 ttctttcttttacacagttaaataccacacacgcgtgtgcttctcattctttttctttgtgatttcaattttggaaatcattcccatt 244  Q
    ||||||| ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  39864892 ttctttcctttacacagttaaataccacacgagcgcgtgcttctcattctttttctttgtgattttaatttcggaaatcattcccatt 39864979  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 29771267 - 29771186
Alignment:
Q  157 ttctttcttttacacagttaaataccacacacgcgtgtgcttctcattctttttctttgtgatttcaattttggaaatcatt 238  Q
    ||||||| |||||||||||||||||||||| |||| |||||| ||| |||||||||||||||||||||||| ||||||||||    
T  29771267 ttctttcctttacacagttaaataccacacgcgcgcgtgcttttcactctttttctttgtgatttcaatttcggaaatcatt 29771186  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 4330076 - 4330020
Alignment:
Q  188 cgcgtgtgcttctcattctttttctttgtgatttcaattttggaaatcattcccatt 244  Q
    |||| ||||||||||||||||||||||||||||||||||| | |||||| |||||||    
T  4330076 cgcgcgtgcttctcattctttttctttgtgatttcaatttcgaaaatcactcccatt 4330020  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 29771369 - 29771331
Alignment:
Q  55 aatatgcattcaataaatgaatctcacttaattcatctc 93  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  29771369 aatatgcattaaataaatgaatctcacttaattcatctc 29771331  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 4330206 - 4330168
Alignment:
Q  55 aatatgcattcaataaatgaatctcacttaattcatctc 93  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  4330206 aatatgcattaaataaatggatctcacttaattcatctc 4330168  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 39864790 - 39864828
Alignment:
Q  55 aatatgcattcaataaatgaatctcacttaattcatctc 93  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  39864790 aatatgcattaaataaatgaatctcatttaattcatctc 39864828  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 12639305 - 12639380
Alignment:
Q  157 ttctttcttttacacagttaaataccacacacgcgtgtgcttctcattctttttctttgtgatttcaattttggaa 232  Q
    ||||||| ||||||||  |||||||||||| |||| ||||||||||||||||| | ||||||||||||||| ||||    
T  12639305 ttctttcctttacacatctaaataccacacgcgcgcgtgcttctcattcttttccattgtgatttcaatttcggaa 12639380  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 28104328 - 28104241
Alignment:
Q  157 ttctttcttttacacagttaaataccacacacgcgtgtgcttctcattctttttctttgtgatttcaattttggaaatcattcccatt 244  Q
    ||||||| ||||||||| |||||||||||  | || ||||||||||||||||| |||||||| || ||||| ||||| || |||||||    
T  28104328 ttctttcctttacacagctaaataccacatgcacgcgtgcttctcattcttttcctttgtgagttgaatttcggaaagcactcccatt 28104241  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 919083 - 919015
Alignment:
Q  157 ttctttcttttacacagttaaataccacacacgcgtgtgcttctcattctttttctttgtgatttcaat 225  Q
    ||||||| |||||| || |||||| |||||  ||| ||||||||||||||||| |||||| ||||||||    
T  919083 ttctttcatttacatagctaaatatcacacgtgcgcgtgcttctcattcttttcctttgtaatttcaat 919015  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 147172 - 147085
Alignment:
Q  157 ttctttcttttacacagttaaataccacacacgcgtgtgcttctcattctttttctttgtgatttcaattttggaaatcattcccatt 244  Q
    ||||||| ||||||||| |||||| ||||  |||| |||||||||||| |||| ||||||||||| ||||| ||||| || |||||||    
T  147172 ttctttcctttacacagctaaatatcacatgcgcgcgtgcttctcattattttcctttgtgatttgaatttcggaaagcactcccatt 147085  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 26759698 - 26759660
Alignment:
Q  55 aatatgcattcaataaatgaatctcacttaattcatctc 93  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  26759698 aatatgcattaaataaatgaatctcacttaattcatctc 26759660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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