View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0532-Insertion-11 (Length: 59)
Name: NF0532-Insertion-11
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0532-Insertion-11 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 53; Significance: 3e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-22
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 1174099 - 1174047
Alignment:
| Q |
7 |
aacagggacaccagtcacgatcaaaacctcccaattcaatccatccaaatgag |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1174099 |
aacagggacaccagtcacgatcaaaacctcccaattcaatccatccaaatgag |
1174047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-22
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 1238615 - 1238667
Alignment:
| Q |
7 |
aacagggacaccagtcacgatcaaaacctcccaattcaatccatccaaatgag |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1238615 |
aacagggacaccagtcacgatcaaaacctcccaattcaatccatccaaatgag |
1238667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 10174270 - 10174314
Alignment:
| Q |
15 |
caccagtcacgatcaaaacctcccaattcaatccatccaaatgag |
59 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||||| |||||||||||| |
|
|
| T |
10174270 |
caccggtcacaatcaaaatctcccaattcaattcatccaaatgag |
10174314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1206 times since January 2019
Visitors: 3642