View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0532-Insertion-2 (Length: 532)

Name: NF0532-Insertion-2
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0532-Insertion-2
NF0532-Insertion-2
[»] chr5 (2 HSPs)
chr5 (6-377)||(27815706-27816077)
chr5 (475-532)||(27815551-27815608)
[»] chr3 (1 HSPs)
chr3 (62-128)||(46201307-46201373)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 6 - 377
Target Start/End: Complemental strand, 27816077 - 27815706
Alignment:
Q  6 cacctcagggtcagatcgtcggagggtttgtcgtcggtccgttgcttgccgccggtacggtgtttgtcattgctgcttcctttaacaatccgtcttatca 105  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27816077 cacctcagggtcagatcgttggagggtttgtcgtcggtccgttgcttgccgccggtacggtgtttgtcattgctgcttcctttaacaatccttcttatca 27815978  T
Q  106 taggttgcctttagaagaggatgtgaggaataactcagtctccggcggctgtgaagagaagtcgccgccgcagttttctggtggagagtcgtgtatgtat 205  Q
    ||| || ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27815977 tagattacctttggaagaggatgtgaggaataactcagtctccggcggctatgaagagaagtcgccgccgcagctttctggtggagagtcgtgtatgtat 27815878  T
Q  206 agctctcagcttccttctgatgtgatttgggctccaacggcaagaacaaatttctgatatattattatcatcactttttgttgacannnnnnnngtagtt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |        ||||||    
T  27815877 agctctcagcttccttctgatgtgatttgggctccaacggcaagaacaaatttctgatatatta--atcatcactttttgttgatattttttttgtagtt 27815780  T
Q  306 gtagtatgagtgtggc--nnnnnnnnnnctttgttcttcatggtttgggtgtaacgttttctaggaagattggt 377  Q
    ||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||    
T  27815779 gtagtatgagtgtggcttttttttttttctttgttcttcatggtttgggtgtaacgttttctaggaagattggt 27815706  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 475 - 532
Target Start/End: Complemental strand, 27815608 - 27815551
Alignment:
Q  475 ttaagaagaaaagcacaacttgacatgcttttctttattaagagaagtcagtccatgc 532  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||    
T  27815608 ttaagaagaaaagcacaacttgacatgcttttcttttttacgaaaagtcagtccatgc 27815551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 46201307 - 46201373
Alignment:
Q  62 acggtgtttgtcattgctgcttcctttaacaatccgtcttatcataggttgcctttagaagaggatg 128  Q
    ||||||||||| |||||| |||| ||||| |||||||| |||||||||||||| || ||||| ||||    
T  46201307 acggtgtttgtgattgcttcttcgtttaataatccgtcgtatcataggttgccgttggaagaagatg 46201373  T

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