View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0532-Insertion-3 (Length: 440)
Name: NF0532-Insertion-3
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0532-Insertion-3 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 8 - 440
Target Start/End: Complemental strand, 4756596 - 4756159
Alignment:
| Q |
8 |
ctatacatacctgtctttccatatctaataaaataaaagtaacattaatcacttttgtgagtagtactaaagatgttttgactcctctacagccgcatac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4756596 |
ctatacatacctgtctttccatatctaataaaataaaagtaacattaataacttttgtgagtagtactaaagatgttttgactcctctacagccacatac |
4756497 |
T |
|
| Q |
108 |
ggtgcaatactttcagaattgttgaaattagttaaactgaaagtcaaaagtttaacagtttaaataattcaacgattctctagtaactgtaccgtacaaa |
207 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4756496 |
ggtgcaatactttcagaatcgttgaaattagttaaactgaaagtcaaaagtttaactctttaaataattcaacgattctctagtaactgtaccgtacaaa |
4756397 |
T |
|
| Q |
208 |
tgccgcagagaattcaaattcacactatgagc--aatagatagaagagtacctagaaacaaggttattgatgaaggaatcaggat---cagacttgaagg |
302 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | |
|
|
| T |
4756396 |
tgcggcagagaattcaaattcacactatgagcaaaatagatagaagagtacctagaaacaaggttattgatgaaggaatcaggatcagcagatttgaaag |
4756297 |
T |
|
| Q |
303 |
ctttgaggaaggtaggcatgttgccaaggaaaggccaacccatatcacctggtgggagattttgtgattttcccaacctaccaacatagtaccattcatt |
402 |
Q |
| |
|
|||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4756296 |
ctttaaggaaggtaggcatgttaccaaagaaaggccaacccatatcacctggtgggagattttgtgattttcccaacctaccaacatagtaccattcatt |
4756197 |
T |
|
| Q |
403 |
caatctccttaggaaaccaaacacaaatgcatatccac |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4756196 |
caatctccttaggaaaccaaacacaaatgcatatccac |
4756159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 310 - 440
Target Start/End: Complemental strand, 4746683 - 4746553
Alignment:
| Q |
310 |
gaaggtaggcatgttgccaaggaaaggccaacccatatcacctggtgggagattttgtgattttcccaacctaccaacatagtaccattcattcaatctc |
409 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4746683 |
gaaggtaggcatgttaccaaagaaaggccaacccatatcacctggtgggagattttgtgattttcccaacctaccaacatagtaccattcattcaatctc |
4746584 |
T |
|
| Q |
410 |
cttaggaaaccaaacacaaatgcatatccac |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4746583 |
cttaggaaaccaaacacaaatgcatatccac |
4746553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1260 times since January 2019
Visitors: 3642