View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0532-Insertion-4 (Length: 292)
Name: NF0532-Insertion-4
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0532-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 55692203 - 55692095
Alignment:
| Q |
126 |
tttccacgtcttgcaatcgtgctagtagggccacttccatccctacaatgtgccacctcacttcttctcttcacattgtttcatggacaaaatacatctt |
225 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
55692203 |
tttccacgtcttgcaatcgtgctagtagggacacttccatccctacaatgtgccacctcacttcttctcttctcattgtttcatggacaaaatacatctt |
55692104 |
T |
|
| Q |
226 |
tcatatcac |
234 |
Q |
| |
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||||||||| |
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| T |
55692103 |
tcatatcac |
55692095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 6163462 - 6163569
Alignment:
| Q |
8 |
gaattgtaataatgtgtcacttttatatactttttcgttagttttaagtttaatagcctatacaaatttctctatcacaaatcagcttcttctccaagtt |
107 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6163462 |
gaattgtaataatgtgtcacttttatatacttttccgttagttttaagtttaatagcctatacaaatttctctatcacaaatcagcttcttctgcaagtt |
6163561 |
T |
|
| Q |
108 |
catattga |
115 |
Q |
| |
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|||||||| |
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| T |
6163562 |
catattga |
6163569 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 28158822 - 28158708
Alignment:
| Q |
8 |
gaattgtaataatgtgtcact--tttatatactttttcgttagttttaagtttaatagcctatacaaatttctctatcacaaatcagcttcttctccaag |
105 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28158822 |
gaattgtaataatgtgtcactaatttatatacttttccgttaattttaagtttaatagcctatacaaatttctctatcacaaatcagcttcttctgcaag |
28158723 |
T |
|
| Q |
106 |
ttcatattgaattct |
120 |
Q |
| |
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||||||||||||||| |
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|
| T |
28158722 |
ttcatattgaattct |
28158708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 14359499 - 14359609
Alignment:
| Q |
8 |
gaattgtaataatgtgtcacttttatatactttttcgttagttttaagtttaatagcctatacaaatttctctatcacaaatcagcttcttctccaagtt |
107 |
Q |
| |
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||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
14359499 |
gaattgtaataatttgtcacttttatatacttttccgttagtttcaagtttaatagcctatacaaatttctctatcacaaatgagcttcttctgcaagtt |
14359598 |
T |
|
| Q |
108 |
catattgaatt |
118 |
Q |
| |
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||||||||||| |
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|
| T |
14359599 |
catattgaatt |
14359609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 4840040 - 4840069
Alignment:
| Q |
8 |
gaattgtaataatgtgtcacttttatatac |
37 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
4840040 |
gaattgtaataatgtgtcacttttatatac |
4840069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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