View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0532-Insertion-9 (Length: 142)

Name: NF0532-Insertion-9
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0532-Insertion-9
NF0532-Insertion-9
[»] chr3 (11 HSPs)
chr3 (8-139)||(23351362-23351493)
chr3 (8-118)||(23385721-23385831)
chr3 (10-119)||(23439284-23439393)
chr3 (8-118)||(23471821-23471931)
chr3 (8-119)||(23446685-23446796)
chr3 (10-127)||(23404083-23404200)
chr3 (8-127)||(23498426-23498545)
chr3 (10-119)||(23462710-23462819)
chr3 (8-119)||(23453461-23453572)
chr3 (8-119)||(23477985-23478096)
chr3 (72-119)||(36001906-36001953)
[»] scaffold0201 (1 HSPs)
scaffold0201 (8-118)||(10856-10966)
[»] chr4 (1 HSPs)
chr4 (61-118)||(12897546-12897603)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 6e-69; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 6e-69
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 23351493 - 23351362
Alignment:
Q  8 cctgcgtcagctccatccatccatcttttctctccctcgacttatatttctagatttagaagattgcataaagattgaaagccttaaaaccaacattcat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23351493 cctgcgtcagctccatccatccatcttttctctccctcgacttatatttctagatttagaagattgcataaagattgaaagccttaaaaccaacattcat 23351394  T
Q  108 tcaaaatctctttgtaaacttaaactcggtgg 139  Q
    ||||||||||||||||||||||||||||||||    
T  23351393 tcaaaatctctttgtaaacttaaactcggtgg 23351362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 23385831 - 23385721
Alignment:
Q  8 cctgcgtcagctccatccatccatcttttctctccctcgacttatatttctagatttagaagattgcataaagattgaaagccttaaaaccaacattcat 107  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||  || ||||||||||||||||||||||||| |||||||||||    
T  23385831 cctgcgtcagctccatccatccatcttttctctccctcgaattatatatctagatttaagaggttgcataaagattgaaagccttaaatccaacattcat 23385732  T
Q  108 tcaaaatctct 118  Q
    |||||||||||    
T  23385731 tcaaaatctct 23385721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 23439393 - 23439284
Alignment:
Q  10 tgcgtcagctccatccatccatcttttctctccctcgacttatatttctagatttagaagattgcataaagattgaaagccttaaaaccaacattcattc 109  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||| |  ||||||||||||||||| |||||||||||    
T  23439393 tgcgtcagctccatccatccatcttttctctccctcgacttacatttctagatttaggaggttgcattactattgaaagccttaaaacgaacattcattc 23439294  T
Q  110 aaaatctctt 119  Q
    ||||||||||    
T  23439293 aaaatctctt 23439284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 23471931 - 23471821
Alignment:
Q  8 cctgcgtcagctccatccatccatcttttctctccctcgacttatatttctagatttagaagattgcataaagattgaaagccttaaaaccaacattcat 107  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||  | |||||||||| || |||||||||||| ||||||||||||||||| ||||||    
T  23471931 cctgcgtcatctccatccatacatcttttctctccctcgacttattgtactagatttaggaggttgcataaagatcgaaagccttaaaaccaatattcat 23471832  T
Q  108 tcaaaatctct 118  Q
    ||||| |||||    
T  23471831 tcaaattctct 23471821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 23446796 - 23446685
Alignment:
Q  8 cctgcgtcagctccatccatccatcttttctctccctcgacttatatttctagatttagaagattgcataaagattgaaagccttaaaaccaacattcat 107  Q
    |||| ||||||||||||| ||||||||||||||||||   |||| || ||||||||||  ||| |||| |||||||||||||||||||||||||||||||    
T  23446796 cctgggtcagctccatccttccatcttttctctccctgatcttagatatctagatttacgagactgcaaaaagattgaaagccttaaaaccaacattcat 23446697  T
Q  108 tcaaaatctctt 119  Q
    ||||||||||||    
T  23446696 tcaaaatctctt 23446685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 23404200 - 23404083
Alignment:
Q  10 tgcgtcagctccatccatccatcttttctctccctcgacttatatttctagatttagaagattgcataaagattgaaagccttaaaaccaacattcattc 109  Q
    ||||||| |||||||||||||||||||||||||||| ||||  || |||||| |||  || ||||||||  ||||||||||||||||| |||||||||||    
T  23404200 tgcgtcaactccatccatccatcttttctctccctcaacttcaatatctagacttaagaggttgcataagtattgaaagccttaaaacaaacattcattc 23404101  T
Q  110 aaaatctctttgtaaact 127  Q
    ||||||||||||| ||||    
T  23404100 aaaatctctttgtcaact 23404083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 23498545 - 23498426
Alignment:
Q  8 cctgcgtcagctccatccatccatcttttctctccctcgacttatatttctagatttagaagattgcataaagattgaaagccttaaaaccaacattcat 107  Q
    |||| ||||||||||| | || |||||||||||||||   |||| || ||||||||||  || ||||| |||||||||||||||||||||||||||||||    
T  23498545 cctgggtcagctccattcttcgatcttttctctccctgatcttagatatctagatttacgaggttgcaaaaagattgaaagccttaaaaccaacattcat 23498446  T
Q  108 tcaaaatctctttgtaaact 127  Q
    ||||||||||||||| ||||    
T  23498445 tcaaaatctctttgtgaact 23498426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 23462819 - 23462710
Alignment:
Q  10 tgcgtcagctccatccatccatcttttctctccctcgacttatatttctagatttagaagattgcataaagattgaaagccttaaaaccaacattcattc 109  Q
    ||||||| |||||||||||||||||||||||||||| ||||  || |||||| |||  || ||||||||  ||||||||||||||||| |||||||||||    
T  23462819 tgcgtcaactccatccatccatcttttctctccctcaacttcaatatctagacttaagaggttgcataagtattgaaagccttaaaacaaacattcattc 23462720  T
Q  110 aaaatctctt 119  Q
    ||||||||||    
T  23462719 aaaatctctt 23462710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 23453572 - 23453461
Alignment:
Q  8 cctgcgtcagctccatccatccatcttttctctccctcgacttatatttctagatttagaagattgcataaagattgaaagccttaaaaccaacattcat 107  Q
    |||| ||||||||||||| |||||||| | |||||||   |||| || ||||||||||  || ||||| |||||||||||||||||||||||||||||||    
T  23453572 cctgtgtcagctccatccttccatcttctgtctccctgatcttagatatctagatttacgaggttgcaaaaagattgaaagccttaaaaccaacattcat 23453473  T
Q  108 tcaaaatctctt 119  Q
    ||||||||||||    
T  23453472 tcaaaatctctt 23453461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 23478096 - 23477985
Alignment:
Q  8 cctgcgtcagctccatccatccatcttttctctccctcgacttatatttctagatttagaagattgcataaagattgaaagccttaaaaccaacattcat 107  Q
    |||| ||||||||||| | || |||||||||||||||   |||| || ||||||||||  || ||||| |||||||||||||||||||||||||||||||    
T  23478096 cctgggtcagctccattcttctatcttttctctccctgatcttagatatctagatttacgaggttgcaaaaagattgaaagccttaaaaccaacattcat 23477997  T
Q  108 tcaaaatctctt 119  Q
    ||||||||||||    
T  23477996 tcaaaatctctt 23477985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 36001953 - 36001906
Alignment:
Q  72 tgcataaagattgaaagccttaaaaccaacattcattcaaaatctctt 119  Q
    |||| ||||||| ||||||| |||||||||||||||||||||||||||    
T  36001953 tgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctctt 36001906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 59; Significance: 2e-25; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 10966 - 10856
Alignment:
Q  8 cctgcgtcagctccatccatccatcttttctctccctcgacttatatttctagatttagaagattgcataaagattgaaagccttaaaaccaacattcat 107  Q
    |||||||||||||||| |||||||| |||||||||||||||||   | ||||||||||  || ||||||||| ||||||||||||||| || | ||||||    
T  10966 cctgcgtcagctccatacatccatcctttctctccctcgacttgattatctagatttacgaggttgcataaatattgaaagccttaaagccgagattcat 10867  T
Q  108 tcaaaatctct 118  Q
    |||||||||||    
T  10866 tcaaaatctct 10856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 12897546 - 12897603
Alignment:
Q  61 atttagaagattgcataaagattgaaagccttaaaaccaacattcattcaaaatctct 118  Q
    ||||| ||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  12897546 atttaaaaggttgcaaaaagattgaaagcctgaaaactaacattcattcaaaatctct 12897603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1245 times since January 2019
Visitors: 3642