View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0532_high_15 (Length: 371)

Name: NF0532_high_15
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0532_high_15
NF0532_high_15
[»] chr5 (11 HSPs)
chr5 (260-342)||(8955816-8955898)
chr5 (89-163)||(3135929-3136003)
chr5 (173-218)||(842742-842787)
chr5 (176-255)||(37522769-37522849)
chr5 (176-255)||(37562941-37563021)
chr5 (173-255)||(11262060-11262143)
chr5 (173-218)||(6686323-6686368)
chr5 (184-218)||(38130334-38130368)
chr5 (181-218)||(9957631-9957668)
chr5 (181-217)||(20643924-20643960)
chr5 (119-163)||(27645841-27645885)
[»] chr4 (11 HSPs)
chr4 (85-163)||(52720603-52720681)
chr4 (175-252)||(56318242-56318319)
chr4 (173-255)||(14332659-14332742)
chr4 (85-163)||(51288943-51289021)
chr4 (175-218)||(2229185-2229228)
chr4 (173-218)||(28669169-28669214)
chr4 (173-218)||(47867817-47867862)
chr4 (173-213)||(7654570-7654610)
chr4 (173-214)||(26916267-26916308)
chr4 (181-218)||(29203414-29203451)
chr4 (173-218)||(41414778-41414823)
[»] chr8 (8 HSPs)
chr8 (85-163)||(10382037-10382115)
chr8 (173-255)||(7858428-7858511)
chr8 (113-163)||(9484271-9484321)
chr8 (173-218)||(7022580-7022625)
chr8 (183-218)||(13143671-13143706)
chr8 (183-218)||(30576045-30576080)
chr8 (129-163)||(2320223-2320257)
chr8 (181-255)||(34890390-34890465)
[»] chr2 (9 HSPs)
chr2 (173-255)||(6110376-6110459)
chr2 (173-218)||(45085197-45085242)
chr2 (173-264)||(35517015-35517107)
chr2 (173-255)||(41528159-41528241)
chr2 (173-218)||(28599324-28599369)
chr2 (183-218)||(5280697-5280732)
chr2 (184-218)||(18454974-18455008)
chr2 (184-218)||(40808930-40808964)
chr2 (181-218)||(19264008-19264045)
[»] chr1 (11 HSPs)
chr1 (173-255)||(12449143-12449226)
chr1 (173-255)||(32624182-32624265)
chr1 (173-218)||(39555762-39555807)
chr1 (183-218)||(4672808-4672843)
chr1 (181-255)||(15959855-15959930)
chr1 (179-217)||(32983352-32983390)
chr1 (173-215)||(35691334-35691376)
chr1 (173-255)||(43667476-43667559)
chr1 (118-162)||(41465243-41465287)
chr1 (129-161)||(41466221-41466253)
chr1 (129-161)||(45320464-45320496)
[»] chr7 (13 HSPs)
chr7 (175-264)||(16562641-16562731)
chr7 (175-264)||(16602931-16603021)
chr7 (175-255)||(45485855-45485936)
chr7 (173-264)||(14805763-14805855)
chr7 (173-264)||(15252757-15252849)
chr7 (173-264)||(18102422-18102514)
chr7 (89-161)||(31235126-31235198)
chr7 (173-218)||(25737802-25737847)
chr7 (184-218)||(47778681-47778715)
chr7 (173-218)||(12633162-12633207)
chr7 (181-218)||(25944485-25944522)
chr7 (173-218)||(47557922-47557967)
chr7 (173-217)||(19912944-19912988)
[»] chr6 (5 HSPs)
chr6 (175-255)||(21542320-21542401)
chr6 (173-255)||(35129231-35129314)
chr6 (173-218)||(3095897-3095942)
chr6 (129-163)||(18246183-18246217)
chr6 (89-155)||(18246932-18246998)
[»] chr3 (21 HSPs)
chr3 (89-161)||(1259674-1259746)
chr3 (85-163)||(41638486-41638564)
chr3 (173-218)||(11054443-11054488)
chr3 (173-218)||(23910630-23910675)
chr3 (89-161)||(37242962-37243034)
chr3 (85-163)||(41639101-41639180)
chr3 (173-255)||(36546448-36546531)
chr3 (173-255)||(36561784-36561867)
chr3 (96-161)||(34872973-34873038)
chr3 (173-218)||(37042552-37042597)
chr3 (181-218)||(54465065-54465102)
chr3 (183-218)||(9263919-9263954)
chr3 (183-218)||(50730019-50730054)
chr3 (183-218)||(50782798-50782833)
chr3 (129-163)||(1258671-1258705)
chr3 (181-255)||(14752382-14752457)
chr3 (129-163)||(34873695-34873729)
chr3 (85-163)||(46993327-46993405)
chr3 (173-218)||(23311728-23311773)
chr3 (181-218)||(28875319-28875356)
chr3 (173-218)||(30189513-30189558)
[»] scaffold0774 (1 HSPs)
scaffold0774 (173-218)||(3604-3649)
[»] scaffold0045 (1 HSPs)
scaffold0045 (173-218)||(77897-77942)
[»] scaffold0300 (1 HSPs)
scaffold0300 (173-253)||(749-830)
[»] scaffold0018 (1 HSPs)
scaffold0018 (173-264)||(154754-154846)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 8955816 - 8955898
Alignment:
Q  260 agtaccattttaaagttgtgcttgtatcttgacgtaaacgcaatgtttggaaacactcaaaacaggtaatggtacaatttaca 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8955816 agtaccattttaaagttgtgcttgtatcttgacgtaaacgcaatgttgggaaacactcaaaacaggtaatggtacaatttaca 8955898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 3136003 - 3135929
Alignment:
Q  89 gtgttctcaaattaatctaatcactaaagtaaactttcttatggtgggaatgttttataccttcccatgtgaaat 163  Q
    ||||| ||||||||||||| |  ||||| |||||||||  |||||||||| ||||||||||||||||||||||||    
T  3136003 gtgttttcaaattaatctagtggctaaaataaactttcccatggtgggaaggttttataccttcccatgtgaaat 3135929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 842742 - 842787
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  842742 tcttggaaaagataaaagtttatcttttttgcttatattttgggac 842787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 37522769 - 37522849
Alignment:
Q  176 tggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgg 255  Q
    |||||||||||||| ||| ||||||||||||||||||||||||        |||||| |||||||||||||||||||||||    
T  37522769 tggaaaagataaaagtttgtcttttttgcttatattttgggacgaagaaaatgtgttttttttgcttatattatgggacgg 37522849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 37562941 - 37563021
Alignment:
Q  176 tggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgg 255  Q
    |||||||||||||| ||| ||||||||||||||||||||||||        |||||| |||||||||||||||||||||||    
T  37562941 tggaaaagataaaagtttgtcttttttgcttatattttgggacgaagaaaatgtgttttttttgcttatattatgggacgg 37563021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 11262060 - 11262143
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgg 255  Q
    ||||||||||||||||| ||| |||||||| |||||||||||||||        |||||| |||||||||||||||||||||||    
T  11262060 tcttggaaaagataaaagtttgtcttttttacttatattttgggacaaagaaaatgtgttttttttgcttatattatgggacgg 11262143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 6686368 - 6686323
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||    
T  6686368 tcttggaaaagataaaagtttatcttttttgtttatattttgggac 6686323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 38130334 - 38130368
Alignment:
Q  184 ataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||||||||||||||| |||||||||||||||    
T  38130334 ataaaaatttatcttttttacttatattttgggac 38130368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 9957631 - 9957668
Alignment:
Q  181 aagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  9957631 aagataaaagtttgtcttttttgcttatattttgggac 9957668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 20643960 - 20643924
Alignment:
Q  181 aagataaaaatttatcttttttgcttatattttggga 217  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  20643960 aagataaaagtttgtcttttttgcttatattttggga 20643924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 27645885 - 27645841
Alignment:
Q  119 aaactttcttatggtgggaatgttttataccttcccatgtgaaat 163  Q
    ||||||| | |||||||||| |||||| |||||||||||||||||    
T  27645885 aaactttttcatggtgggaaggttttacaccttcccatgtgaaat 27645841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 52720681 - 52720603
Alignment:
Q  85 gattgtgttctcaaattaatctaatcactaaagtaaactttcttatggtgggaatgttttataccttcccatgtgaaat 163  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52720681 gattgtgttctcaaattaatctaaccactaaagtaaactttcctatggtgggaatgttttataccttcccatgtgaaat 52720603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 56318242 - 56318319
Alignment:
Q  175 ttggaaaagataaaaatttatcttttttgcttatattttgggacnnnnnnntgtgttatttttgcttatattatggga 252  Q
    ||||||||||||||| | | ||||||||||||||||||||||||       |||||| ||||||||||||||||||||    
T  56318242 ttggaaaagataaaagtatgtcttttttgcttatattttgggacaaaaaaatgtgttttttttgcttatattatggga 56318319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 14332742 - 14332659
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgg 255  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||        |||||| |||||||||||||||||| ||||    
T  14332742 tcttggaaaagataaaagtttgtcttttttgcttatattttgggacaaagaaaatgtgttttttttgcttatattatggaacgg 14332659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 163
Target Start/End: Original strand, 51288943 - 51289021
Alignment:
Q  85 gattgtgttctcaaattaatctaatcactaaagtaaactttcttatggtgggaatgttttataccttcccatgtgaaat 163  Q
    ||||||||||||| |||||||||||  ||||| |||| ||| ||||||||| || |||||||||||| ||||| |||||    
T  51288943 gattgtgttctcagattaatctaatggctaaaataaatttttttatggtggaaaagttttatacctttccatgagaaat 51289021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 2229228 - 2229185
Alignment:
Q  175 ttggaaaagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||    
T  2229228 ttggaaaagataaaagtttgtcttttttgcttatattttgggac 2229185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 28669169 - 28669214
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||| ||||||||||||||| || |||||||||||||||||||||    
T  28669169 tcttgaaaaagataaaaatttgtcctttttgcttatattttgggac 28669214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 47867862 - 47867817
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||| ||||||||||| ||| ||||||||||||||||||||||||    
T  47867862 tcttgaaaaagataaaagtttttcttttttgcttatattttgggac 47867817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 7654610 - 7654570
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatatttt 213  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  7654610 tcttggaaaagataaaagtttgtcttttttgcttatatttt 7654570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 26916308 - 26916267
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttg 214  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||    
T  26916308 tcttgaaaaggataaaagtttatcttttttgcttatattttg 26916267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 29203451 - 29203414
Alignment:
Q  181 aagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  29203451 aagataaaagtttgtcttttttgcttatattttgggac 29203414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 41414778 - 41414823
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||| ||||||||||| ||| |||||||| |||||||||||||||    
T  41414778 tcttgaaaaagataaaagtttgtcttttttacttatattttgggac 41414823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 10382115 - 10382037
Alignment:
Q  85 gattgtgttctcaaattaatctaatcactaaagtaaactttcttatggtgggaatgttttataccttcccatgtgaaat 163  Q
    ||||||||| ||||||||||||||  ||||||||||||||||  || ||||||||||||||||||||| ||||||||||    
T  10382115 gattgtgttttcaaattaatctaacaactaaagtaaactttcccatagtgggaatgttttataccttcgcatgtgaaat 10382037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 7858511 - 7858428
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgg 255  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||        |||||| ||||||||||||||||| |||||    
T  7858511 tcttggaaaagataaaagtttgtcttttttgcttatattttgggacaaagaaaatgtgttttttttgcttatattatgtgacgg 7858428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 9484321 - 9484271
Alignment:
Q  113 taaagtaaactttcttatggtgggaatgttttataccttcccatgtgaaat 163  Q
    ||||||||| ||| ||||||||||||||||||||||||||| |||||||||    
T  9484321 taaagtaaatttttttatggtgggaatgttttataccttccaatgtgaaat 9484271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 7022580 - 7022625
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||| ||||||||||| ||| ||||||||||||||||||||||||    
T  7022580 tcttgaaaaagataaaagtttgtcttttttgcttatattttgggac 7022625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 218
Target Start/End: Complemental strand, 13143706 - 13143671
Alignment:
Q  183 gataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||| ||||||||||||||||||||||||||||    
T  13143706 gataaaagtttatcttttttgcttatattttgggac 13143671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 30576045 - 30576080
Alignment:
Q  183 gataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||||||| ||||||||||||||||||||||||    
T  30576045 gataaaaatttgtcttttttgcttatattttgggac 30576080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 2320223 - 2320257
Alignment:
Q  129 atggtgggaatgttttataccttcccatgtgaaat 163  Q
    |||||||||| ||||||||||||||||||||||||    
T  2320223 atggtgggaaggttttataccttcccatgtgaaat 2320257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 34890390 - 34890465
Alignment:
Q  181 aagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgg 255  Q
    ||||||||| ||| ||||||||||||||||||||||||        || ||| |||||||||||||||||||||||    
T  34890390 aagataaaagtttgtcttttttgcttatattttgggacaaagaaaatgagttttttttgcttatattatgggacgg 34890465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 6110376 - 6110459
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgg 255  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||        |||||| |||||||||||||||||||||||    
T  6110376 tcttggaaaagataaaagtttgtcttttttgcttatattttgggacaaagaaaatgtgttttttttgcttatattatgggacgg 6110459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 45085242 - 45085197
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac 218  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||    
T  45085242 tcttagaaaagataaaagtttatcttttttgcttatattttgggac 45085197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 35517107 - 35517015
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgggcggagtac 264  Q
    ||||| ||||||||||| ||| ||||||||||||||||||||| ||        |||||| |||||||||||||||||||||||  |||||||    
T  35517107 tcttgaaaaagataaaagtttgtcttttttgcttatattttggtacgaagaaaatgtgttttttttgcttatattatgggacggagggagtac 35517015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 41528241 - 41528159
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgg 255  Q
    ||||| ||||||||||| ||| ||||||||||||||||||||||||        |||||| |||||||||||||||||||||||    
T  41528241 tcttgaaaaagataaaagtttgtcttttttgcttatattttgggacaaacaaaatgtgtt-tttttgcttatattatgggacgg 41528159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 28599324 - 28599369
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  28599324 tcttggaaaagataaaagtttgtcttttttgattatattttgggac 28599369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 5280697 - 5280732
Alignment:
Q  183 gataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||||||| ||||||||||||||||||||||||    
T  5280697 gataaaaatttgtcttttttgcttatattttgggac 5280732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 18455008 - 18454974
Alignment:
Q  184 ataaaaatttatcttttttgcttatattttgggac 218  Q
    |||||||||||||||||||||||||||||| ||||    
T  18455008 ataaaaatttatcttttttgcttatattttaggac 18454974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 40808930 - 40808964
Alignment:
Q  184 ataaaaatttatcttttttgcttatattttgggac 218  Q
    |||||||||| ||||||||||||||||||||||||    
T  40808930 ataaaaatttgtcttttttgcttatattttgggac 40808964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 19264045 - 19264008
Alignment:
Q  181 aagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  19264045 aagataaaagtttgtcttttttgcttatattttgggac 19264008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 12449143 - 12449226
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgg 255  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||        |||||| |||||||||||||||||||||||    
T  12449143 tcttggaaaagataaaagtttgtcttttttgcttatattttgggacaaagaaaatgtgttttttttgcttatattatgggacgg 12449226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 32624182 - 32624265
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgg 255  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||        |||||| |||||||||||||||||||||||    
T  32624182 tcttggaaaagataaaagtttgtcttttttgcttatattttgggacaaagaaaatgtgttttttttgcttatattatgggacgg 32624265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 39555762 - 39555807
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||    
T  39555762 tcttggaaaagataaaagtttgtcttttttgcttatattttgggac 39555807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 218
Target Start/End: Complemental strand, 4672843 - 4672808
Alignment:
Q  183 gataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||||||||||||||||||||||||||||||||    
T  4672843 gataaaaatttatcttttttgcttatattttgggac 4672808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 15959855 - 15959930
Alignment:
Q  181 aagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgg 255  Q
    ||||||||||||| ||||||||||||||||||||||||        || ||| |||||||||||||||||||||||    
T  15959855 aagataaaaatttgtcttttttgcttatattttgggacaaagaaaatgagttttttttgcttatattatgggacgg 15959930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 32983352 - 32983390
Alignment:
Q  179 aaaagataaaaatttatcttttttgcttatattttggga 217  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  32983352 aaaagataaaaatttgtcttttttgcttatattttggga 32983390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 35691376 - 35691334
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgg 215  Q
    ||||| ||||||||||||||||| |||||| ||||||||||||    
T  35691376 tcttgaaaaagataaaaatttattttttttacttatattttgg 35691334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 43667476 - 43667559
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgg 255  Q
    ||||| ||||||||||| ||| |||||||||||||||||||| |||        |||||| ||||| |||||||||||||||||    
T  43667476 tcttgaaaaagataaaagtttgtcttttttgcttatattttgagacaaagaaaatgtgtttttttttcttatattatgggacgg 43667559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 41465287 - 41465243
Alignment:
Q  118 taaactttcttatggtgggaatgttttataccttcccatgtgaaa 162  Q
    |||||||||  |||||||||| |||||| ||||||||||||||||    
T  41465287 taaactttcccatggtgggaaggttttacaccttcccatgtgaaa 41465243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 41466253 - 41466221
Alignment:
Q  129 atggtgggaatgttttataccttcccatgtgaa 161  Q
    |||||||||| ||||||||||||||||||||||    
T  41466253 atggtgggaaggttttataccttcccatgtgaa 41466221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 45320496 - 45320464
Alignment:
Q  129 atggtgggaatgttttataccttcccatgtgaa 161  Q
    |||||||||| ||||||||||||||||||||||    
T  45320496 atggtgggaaggttttataccttcccatgtgaa 45320464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 175 - 264
Target Start/End: Complemental strand, 16562731 - 16562641
Alignment:
Q  175 ttggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgggcggagtac 264  Q
    ||||||||||||||||||| |||||||| |||||||||||||||        |||||| |||||||||||||||||||||||  |||||||    
T  16562731 ttggaaaagataaaaatttgtcttttttacttatattttgggacaaagaaaatgtgttttttttgcttatattatgggacggagggagtac 16562641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 16602931 - 16603021
Alignment:
Q  175 ttggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgggcggagtac 264  Q
    ||||||||||||||||||| |||||||| |||||||||||||||        |||||| |||||||||||||||||||||||  |||||||    
T  16602931 ttggaaaagataaaaatttgtcttttttacttatattttgggacaaagaaaatgtgttttttttgcttatattatgggacggagggagtac 16603021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 45485936 - 45485855
Alignment:
Q  175 ttggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgg 255  Q
    ||||||||||||||| ||| ||||||||||||||||||| ||||        ||||||||||||||||||||||||||||||    
T  45485936 ttggaaaagataaaattttgtcttttttgcttatatttttggacaaagaaaatgtgttatttttgcttatattatgggacgg 45485855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 14805855 - 14805763
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgggcggagtac 264  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||||||        |||||| |||||||||||||||||||||||  |||||||    
T  14805855 tcttggaaaagataaaagtttgtctgttttgcttatattttgggacaaagaaaatgtgttttttttgcttatattatgggacggagggagtac 14805763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 15252849 - 15252757
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgggcggagtac 264  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||||||        |||||| |||||||||||||||||||||||  |||||||    
T  15252849 tcttggaaaagataaaagtttgtctgttttgcttatattttgggacaaagaaaatgtgttttttttgcttatattatgggacggagggagtac 15252757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 18102514 - 18102422
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgggcggagtac 264  Q
    ||||| ||||||||||| ||| ||||||||||||||||||||||||        |||||| |||||||||||||||||||||||  |||||||    
T  18102514 tcttgaaaaagataaaagtttgtcttttttgcttatattttgggacaaagaaaatgtgttttttttgcttatattatgggacggagggagtac 18102422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 31235126 - 31235198
Alignment:
Q  89 gtgttctcaaattaatctaatcactaaagtaaactttcttatggtgggaatgttttataccttcccatgtgaa 161  Q
    ||||| |||||||||||||||  |||||  ||| |||  ||||||||||| ||||||||||||||||||||||    
T  31235126 gtgttttcaaattaatctaatggctaaaacaaatttttctatggtgggaaggttttataccttcccatgtgaa 31235198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 25737802 - 25737847
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||||||||||||| ||| | ||||||||||||||||||||||    
T  25737802 tcttggaaaagataaaagttttttttttttgcttatattttgggac 25737847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 47778715 - 47778681
Alignment:
Q  184 ataaaaatttatcttttttgcttatattttgggac 218  Q
    |||||||||| ||||||||||||||||||||||||    
T  47778715 ataaaaatttgtcttttttgcttatattttgggac 47778681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 12633162 - 12633207
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||||||||||||| ||| ||| ||||| ||||||||||||||    
T  12633162 tcttggaaaagataaaagtttgtctattttgattatattttgggac 12633207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 25944522 - 25944485
Alignment:
Q  181 aagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  25944522 aagataaaagtttgtcttttttgcttatattttgggac 25944485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 47557922 - 47557967
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||| |||| |||||| ||| ||||||||||||||||||||||||    
T  47557922 tcttgaaaaacataaaagtttgtcttttttgcttatattttgggac 47557967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 19912944 - 19912988
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttggga 217  Q
    ||||||||||||||||| ||| ||||||||  |||||||||||||    
T  19912944 tcttggaaaagataaaagtttgtcttttttatttatattttggga 19912988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 21542401 - 21542320
Alignment:
Q  175 ttggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgg 255  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||        |||||| |||||||||||||||||||||||    
T  21542401 ttggaaaagataaaagtttgtcttttttgcttatattttgggacaaagaaaatgtgttttttttgcttatattatgggacgg 21542320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 35129231 - 35129314
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgg 255  Q
    ||||||||||||||||| ||| |||||||||||| |||||||||||        |||||| |||||||||||||||||||||||    
T  35129231 tcttggaaaagataaaagtttgtcttttttgcttgtattttgggacaaagaaaatgtgttttttttgcttatattatgggacgg 35129314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 3095897 - 3095942
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||    
T  3095897 tcttggaaaagataaaagtttgtcttttttgcttatattttgggac 3095942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 18246217 - 18246183
Alignment:
Q  129 atggtgggaatgttttataccttcccatgtgaaat 163  Q
    |||||||||| ||||||||||||||||||||||||    
T  18246217 atggtgggaaagttttataccttcccatgtgaaat 18246183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 18246932 - 18246998
Alignment:
Q  89 gtgttctcaaattaatctaatcactaaagtaaactttcttatggtgggaatgttttataccttccca 155  Q
    ||||| |||||||||||||||  |||||  ||| |||  ||||||||||| ||||||||||||||||    
T  18246932 gtgttttcaaattaatctaatggctaaaacaaatttttctatggtgggaaggttttataccttccca 18246998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 1259674 - 1259746
Alignment:
Q  89 gtgttctcaaattaatctaatcactaaagtaaactttcttatggtgggaatgttttataccttcccatgtgaa 161  Q
    ||||| |||||||||||||||  |||||  ||| ||||| |||||||||| ||||||||||||||||||||||    
T  1259674 gtgttttcaaattaatctaatggctaaaacaaattttctcatggtgggaaggttttataccttcccatgtgaa 1259746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 41638564 - 41638486
Alignment:
Q  85 gattgtgttctcaaattaatctaatcactaaagtaaactttcttatggtgggaatgttttataccttcccatgtgaaat 163  Q
    ||||||||||||||||| |||||||  ||||| |||| ||||  ||| |||||| |||||| |||||||||||||||||    
T  41638564 gattgtgttctcaaattgatctaatggctaaaataaattttcccatgatgggaaggttttacaccttcccatgtgaaat 41638486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 11054443 - 11054488
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||    
T  11054443 tcttggaaaagataaaagtttgtcttttttgcttatattttgggac 11054488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 23910630 - 23910675
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  23910630 tcttgaaaaagataaaaatttgtcttttttgcttatattttgggac 23910675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 37242962 - 37243034
Alignment:
Q  89 gtgttctcaaattaatctaatcactaaagtaaactttcttatggtgggaatgttttataccttcccatgtgaa 161  Q
    ||||| |||||||||||||||  |||||  ||| ||||  |||||||||| ||||||||||||||||||||||    
T  37242962 gtgttttcaaattaatctaatggctaaaacaaattttcccatggtgggaaggttttataccttcccatgtgaa 37243034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 163
Target Start/End: Original strand, 41639101 - 41639180
Alignment:
Q  85 gattgtgttctcaaattaatctaatcactaaagtaaactttcttatggtgggaatgtttt-ataccttcccatgtgaaat 163  Q
    |||||||||||||||||||||||||  ||||| |||| ||||  |||||||||| ||||| | ||||| |||||||||||    
T  41639101 gattgtgttctcaaattaatctaatggctaaaataaattttcccatggtgggaaggttttaaaaccttaccatgtgaaat 41639180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 36546531 - 36546448
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgg 255  Q
    ||||| |||||| |||| ||| ||||||||||||||||||||||||        |||||| |||||||||||||||||||||||    
T  36546531 tcttgaaaaagacaaaagtttgtcttttttgcttatattttgggacaaagaaaatgtgttttttttgcttatattatgggacgg 36546448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 36561784 - 36561867
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgg 255  Q
    ||||| |||||| |||| ||| ||||||||||||||||||||||||        |||||| |||||||||||||||||||||||    
T  36561784 tcttgaaaaagacaaaagtttgtcttttttgcttatattttgggacaaagaaaatgtgttttttttgcttatattatgggacgg 36561867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 34873038 - 34872973
Alignment:
Q  96 caaattaatctaatcactaaagtaaactttcttatggtgggaatgttttataccttcccatgtgaa 161  Q
    ||||||||||||||  |||||  ||| ||||  |||||||||| ||||||||||||||||||||||    
T  34873038 caaattaatctaatggctaaaacaaattttcccatggtgggaaggttttataccttcccatgtgaa 34872973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 37042552 - 37042597
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||||||||| ||||||| |||||||| |||||||||||||||    
T  37042552 tcttggaaaagattaaaatttgtcttttttccttatattttgggac 37042597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 54465065 - 54465102
Alignment:
Q  181 aagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  54465065 aagataaaaatttatcttttttgcttatattttaggac 54465102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 218
Target Start/End: Complemental strand, 9263954 - 9263919
Alignment:
Q  183 gataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||||||||| ||||||||||||||||||||||    
T  9263954 gataaaaatttattttttttgcttatattttgggac 9263919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 218
Target Start/End: Complemental strand, 50730054 - 50730019
Alignment:
Q  183 gataaaaatttatcttttttgcttatattttgggac 218  Q
    |||||||||||||||||||| |||||||||||||||    
T  50730054 gataaaaatttatcttttttacttatattttgggac 50730019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 50782798 - 50782833
Alignment:
Q  183 gataaaaatttatcttttttgcttatattttgggac 218  Q
    |||||||||||||||||||| |||||||||||||||    
T  50782798 gataaaaatttatcttttttacttatattttgggac 50782833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 1258705 - 1258671
Alignment:
Q  129 atggtgggaatgttttataccttcccatgtgaaat 163  Q
    |||||||||| ||||||||||||||||||||||||    
T  1258705 atggtgggaaggttttataccttcccatgtgaaat 1258671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 14752382 - 14752457
Alignment:
Q  181 aagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgg 255  Q
    ||||||||| ||| ||||||||||||||||||||||||        || ||| |||||||||||||||||||||||    
T  14752382 aagataaaagtttgtcttttttgcttatattttgggacaaagaaaatgagttttttttgcttatattatgggacgg 14752457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 34873695 - 34873729
Alignment:
Q  129 atggtgggaatgttttataccttcccatgtgaaat 163  Q
    |||||||||| ||||||||||||||||||||||||    
T  34873695 atggtgggaaggttttataccttcccatgtgaaat 34873729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 46993405 - 46993327
Alignment:
Q  85 gattgtgttctcaaattaatctaatcactaaagtaaactttcttatggtgggaatgttttataccttcccatgtgaaat 163  Q
    |||||||||| || |||||||||||  ||||||| ||||||   |||||||||| |||||| || ||||||||| ||||    
T  46993405 gattgtgttcccagattaatctaatggctaaagtgaacttttccatggtgggaaagttttacactttcccatgttaaat 46993327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 23311728 - 23311773
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||| ||||||||||| |||  |||||||||||||||||||||||    
T  23311728 tcttgaaaaagataaaagtttgacttttttgcttatattttgggac 23311773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 28875356 - 28875319
Alignment:
Q  181 aagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  28875356 aagataaaagtttatattttttgcttatattttgggac 28875319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 30189558 - 30189513
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac 218  Q
    |||| |||||||||||||||||||||||||  | ||||||||||||    
T  30189558 tcttagaaaagataaaaatttatcttttttattaatattttgggac 30189513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0774 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0774
Description:

Target: scaffold0774; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 3604 - 3649
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac 218  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||    
T  3604 tcttagaaaagataaaagtttatcttttttgcttatattttgggac 3649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 77942 - 77897
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac 218  Q
    ||||| ||||||||||| ||| ||||||||||||||||||||||||    
T  77942 tcttgaaaaagataaaagtttgtcttttttgcttatattttgggac 77897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 749 - 830
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggac 253  Q
    ||||||||||||||||| ||| | ||||||||||||||||||| ||        |||||| |||||||||||||||||||||    
T  749 tcttggaaaagataaaagtttgtgttttttgcttatattttggtacaaagaaaatgtgttttttttgcttatattatgggac 830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 154846 - 154754
Alignment:
Q  173 tcttggaaaagataaaaatttatcttttttgcttatattttgggac-nnnnnnntgtgttatttttgcttatattatgggacgggcggagtac 264  Q
    ||||| ||||||||||| |||||||||||| ||||||||||| |||        | |||| |||||||||||||||||||||||  |||||||    
T  154846 tcttgaaaaagataaaagtttatcttttttacttatattttgagacaaagaaaatatgttttttttgcttatattatgggacggagggagtac 154754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 144 times since January 2019
Visitors: 3647