View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0532_high_27 (Length: 236)
Name: NF0532_high_27
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0532_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 6803975 - 6804110
Alignment:
| Q |
1 |
ccgctttgctcaatatagatacagacactaaattataattcatatcaggaacatggagaacattacttaatgagaggatttttcctgaagtgagtttcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6803975 |
ccgctttgctcaatatagatacagacactaaattataattcatatcaggaacatggagaacattacttaatgagaggatttttcctgaagtgagtttcaa |
6804074 |
T |
|
| Q |
101 |
gttcacctttcctttaccaagaacagtggctgttct |
136 |
Q |
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| T |
6804075 |
gttcacctttcctttaccaagaacagtggctgttct |
6804110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 14059964 - 14059899
Alignment:
| Q |
1 |
ccgctttgctcaatatagatacagacactaaattataattcatatcaggaacatggagaacattac |
66 |
Q |
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||||||||||||||||||| |||||||| ||||||||| |||||| ||| ||||| | |||||||| |
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| T |
14059964 |
ccgctttgctcaatatagacacagacaccaaattataactcatatgaggcacatgtaaaacattac |
14059899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 26972660 - 26972784
Alignment:
| Q |
1 |
ccgctttgctcaatatagatacagacactaaattataattcatatcaggaacatggagaacattacttaatgagaggatttttcctgaagtgagtttcaa |
100 |
Q |
| |
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||||||||||||||||||| ||| |||| ||||||||| |||||| ||| |||| | |||||||||||| || | | ||||||| || | ||||| || |
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| T |
26972660 |
ccgctttgctcaatatagacacatacaccaaattataactcatatgaggcacatataaaacattacttaaagatatggtttttccagaggcaagttttaa |
26972759 |
T |
|
| Q |
101 |
gttcacctttcctttaccaagaaca |
125 |
Q |
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| ||| |||||| ||||||||||| |
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| T |
26972760 |
atccacttttcctataccaagaaca |
26972784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 53730522 - 53730588
Alignment:
| Q |
4 |
ctttgctcaatatagatacagacactaaattataattcatatcaggaacatggagaacattacttaa |
70 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| |||||| ||| |||| | |||||||||||| |
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|
| T |
53730522 |
ctttgctcaatatagacacagacaccaaattataactcatatgaggcacatataaaacattacttaa |
53730588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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