View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0532_high_5 (Length: 584)

Name: NF0532_high_5
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0532_high_5
NF0532_high_5
[»] chr4 (2 HSPs)
chr4 (264-555)||(33389125-33389416)
chr4 (11-227)||(33389412-33389628)
[»] chr3 (3 HSPs)
chr3 (271-479)||(20815240-20815448)
chr3 (15-266)||(20814138-20814377)
chr3 (480-555)||(20815904-20815979)
[»] chr1 (3 HSPs)
chr1 (271-480)||(38780374-38780583)
chr1 (11-273)||(38781418-38781677)
chr1 (478-555)||(38780166-38780243)


Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 264 - 555
Target Start/End: Complemental strand, 33389416 - 33389125
Alignment:
Q  264 aaccactcagattcctcagtttgtattggaagctgttgatttagagactcgagataaacatagcaagatgatggttgcatgcactcaacctcgtagagtt 363  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33389416 aaccactcagattcctcagtttgtactggaagctgttgatttagagactcgagataaacataggaagatgatggttgcatgcactcaacctcgtagagtt 33389317  T
Q  364 gctgcactgtctgtttcatgccgcgtggctgaagagatggatgtaagtattggggaagaggttggttatagtatcagatttgaagattgtagtagtgcaa 463  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  33389316 gctgcactgtctgtttcacgccgcgtggctgaagagatggatgtaagtattggggaagaggttggttatagtatcagatttgaagattgtagtagttcaa 33389217  T
Q  464 ggacagttttgaagtatctaacagatggtatgcttttgagagaagcgatgacggatccacttttggagcgatacaaagtaattatacttgat 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33389216 ggacagttttgaagtatctaacagatggtatgcttttgagagaagcgatgacggatccacttttggagcgatacaaagtaattatacttgat 33389125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 33389628 - 33389412
Alignment:
Q  11 cagagaggaagagaaaggtgagtctctttgacgtcgtcgatgacgactctactgccaagatggtgaaaacaaacggtggcttaaccgtcaacaacttcat 110  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33389628 cagagaggaagagaaaggtgagtctcgttgacgtcgtcgatgacgactctactgccaagatggtgaaaacaaacggtggtttaaccgtcaacaacttcat 33389529  T
Q  111 taaccgttggaacagaaaaccttactcacaaaggtactatgaaatattggagaagaggaaaacccttccagtttggcaccagaaacaagattttttgcag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33389528 taaccgttggaacagaaaaccttactcacaaaggtactatgaaatattggagaagaggaaaacccttccagtttggcaccagaaacaagattttttgcag 33389429  T
Q  211 gttttgaaggataacca 227  Q
    |||||||||||||||||    
T  33389428 gttttgaaggataacca 33389412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 7e-69; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 271 - 479
Target Start/End: Original strand, 20815240 - 20815448
Alignment:
Q  271 cagattcctcagtttgtattggaagctgttgatttagagactcgagataaacatagcaagatgatggttgcatgcactcaacctcgtagagttgctgcac 370  Q
    ||||| |||||||||||  | |||||||||||||||||||||| ||||||||| |  ||||||||| ||||||||||||| || |||||||| ||||||     
T  20815240 cagatccctcagtttgttctagaagctgttgatttagagactccagataaacacaagaagatgatgattgcatgcactcagccacgtagagtggctgcaa 20815339  T
Q  371 tgtctgtttcatgccgcgtggctgaagagatggatgtaagtattggggaagaggttggttatagtatcagatttgaagattgtagtagtgcaaggacagt 470  Q
    ||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||    
T  20815340 tgtctgtttcccgccgcgtggctgaagagatggatgtgagtattggggaagaggttggttatagcatcagatttgaagattgtagcagtgcaaagacagt 20815439  T
Q  471 tttgaagta 479  Q
    |||||||||    
T  20815440 tttgaagta 20815448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 20814138 - 20814377
Alignment:
Q  15 gaggaagagaaaggtgagtctctttgacgtcgtcgatgacgactctactgccaagatggtgaaaacaaacggtggcttaaccgtcaacaacttcattaac 114  Q
    ||||||||||||||||||| | || || ||||||||   |||||||||||| |||| ||||||||| ||||| || |||| || |||||||             
T  20814138 gaggaagagaaaggtgagtttattcgatgtcgtcga---cgactctactgctaagacggtgaaaaccaacggcggtttaatcggcaacaac--------- 20814225  T
Q  115 cgttggaacagaaaaccttactcacaaaggtactatgaaatattggagaagaggaaaacccttccagtttggcaccagaaacaagattttttgcaggttt 214  Q
    || |||||| ||||||||||||| | ||| ||||  || || ||||||||||||||||||||||| ||||||||||||||| | |||||||||||| |||    
T  20814226 cgctggaacggaaaaccttactctccaagttacttcgagattttggagaagaggaaaacccttccggtttggcaccagaaagatgattttttgcagtttt 20814325  T
Q  215 tgaaggataaccagattttgattcttgttggtgaaactggtagtggtaaaac 266  Q
    | |||||||| |||||||| || || ||||||||||| |||||||| |||||    
T  20814326 ttaaggataatcagattttaatcctcgttggtgaaaccggtagtggcaaaac 20814377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 480 - 555
Target Start/End: Original strand, 20815904 - 20815979
Alignment:
Q  480 tctaacagatggtatgcttttgagagaagcgatgacggatccacttttggagcgatacaaagtaattatacttgat 555  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||    
T  20815904 tctaacagatggtatgcttttgagagaagcaatgacggatccacttttggaacgatacaaagtgattattcttgat 20815979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 3e-62; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 271 - 480
Target Start/End: Complemental strand, 38780583 - 38780374
Alignment:
Q  271 cagattcctcagtttgtattggaagctgttgatttagagactcgagataaacatagcaagatgatggttgcatgcactcaacctcgtagagttgctgcac 370  Q
    ||||| |||||||| || || ||||||||||| |||||| ||| |||||| |  |  ||||||||| ||||||||||||| ||||||||||| |||||      
T  38780583 cagatccctcagttcgttttagaagctgttgaattagaggctccagataagcgcaagaagatgatgattgcatgcactcagcctcgtagagtggctgcca 38780484  T
Q  371 tgtctgtttcatgccgcgtggctgaagagatggatgtaagtattggggaagaggttggttatagtatcagatttgaagattgtagtagtgcaaggacagt 470  Q
    ||||||||||| |||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38780483 tgtctgtttcacgccgtgtggctgaagaaatggatgtgagtattggggaagaggttggttatagcatcagatttgaagattgtagtagtgcaaggacagt 38780384  T
Q  471 tttgaagtat 480  Q
    ||||||||||    
T  38780383 tttgaagtat 38780374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 38781677 - 38781418
Alignment:
Q  11 cagagaggaagagaaaggtgagtctctttgacgtcgtcgatgacgactctactgccaagatggtgaaaacaaacggtggcttaaccgtcaacaacttcat 110  Q
    ||||||| ||||| ||||||||| | || ||||||||||| ||||   || | || |||||||||||||| || || || ||||  |  |||||  ||||    
T  38781677 cagagagaaagaggaaggtgagtttattcgacgtcgtcgacgacg---ctgcagctaagatggtgaaaactaatggcggtttaattggtaacaatctcat 38781581  T
Q  111 taaccgttggaacagaaaaccttactcacaaaggtactatgaaatattggagaagaggaaaacccttccagtttggcaccagaaacaagattttttgcag 210  Q
    ||||||||||||  ||||||||||||| ||||||||  |||| || ||||| ||||||||||||||||| |||||||| |||||| | ||||| ||| ||    
T  38781580 taaccgttggaatggaaaaccttactcgcaaaggtatcatgagattttggaaaagaggaaaacccttcctgtttggcatcagaaagaggatttcttgaag 38781481  T
Q  211 gttttgaaggataaccagattttgattcttgttggtgaaactggtagtggtaaaaccactcag 273  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||    
T  38781480 gttttgaaggataatcagactttgattcttgttggtgaaactggtagtggaaaaaccactcag 38781418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 478 - 555
Target Start/End: Complemental strand, 38780243 - 38780166
Alignment:
Q  478 tatctaacagatggtatgcttttgagagaagcgatgacggatccacttttggagcgatacaaagtaattatacttgat 555  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||    
T  38780243 tatctaacagatggtatgcttttgagagaagcaatgacagatccacttttggagcgatacaaagtaataattcttgat 38780166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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