View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0532_high_8 (Length: 562)
Name: NF0532_high_8
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0532_high_8 |
 | |
|
| [»] scaffold2079 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold2079 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 250 - 553
Target Start/End: Complemental strand, 396 - 96
Alignment:
| Q |
250 |
ccaacttgtgcatttgaggatagtcccataatttgcaatttatgttggtcacctatgggcggattcggggtacgcaatatgagaaaaattctacccgatt |
349 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
396 |
ccaacttgtgcatttgagcatagtcgcataatttgcaattcatgttggtcacctatgggcggattcggggtacgcaatatgagaaaaattctacccgatt |
297 |
T |
|
| Q |
350 |
aagtatagtaggctatcttaatattgcaaaaaagtagtgtctgcgttccaaaatattcttttatattcacnnnnnnnnatcgatgttattttgcaagaga |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
296 |
aagtatagtaggctatcttaatattgcaaaaaagtagtgcctgcgttccaaaatattcttttatattca-ttttttttatccatgttattttgcaagaga |
198 |
T |
|
| Q |
450 |
ctatctctttctcctagcttcaaagaggttttcctacaaaattgatttgctacaccgaatggnnnnnnnnctcttttatcttctactcaacttcttcttc |
549 |
Q |
| |
|
|||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| |
|
|
| T |
197 |
ctatttctttctccaaacttcaaagaggttttcctacaaaattgatttgctacaccggat--ttttttttctcttttatcttctacttaacttcttcttc |
100 |
T |
|
| Q |
550 |
atct |
553 |
Q |
| |
|
|||| |
|
|
| T |
99 |
atct |
96 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 251 - 553
Target Start/End: Complemental strand, 6242208 - 6241912
Alignment:
| Q |
251 |
caacttgtgcatttgaggatagtcccataatttgcaatttatgttggtcacctatgggcggattcggggtacgcaatatgagaaaaattctacccgatta |
350 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||||||||| |||||| |||| ||||| |||||||| |||||||||||||||||| |||| ||| |
|
|
| T |
6242208 |
caacttgttcatttgagcatagtcacataatttgcaattcatgttgatcacgtatggacggattcgcggtacgcaatatgagaaa-------cccggtta |
6242116 |
T |
|
| Q |
351 |
agtatagtaggctatcttaatattgcaaaaaagtagtgtctgcgttccaaaatattcttttatattcacnnnnnnnn-atcgatgttattttgcaagaga |
449 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||| | |||| ||||||||||||||| |||||| |||| | ||||||||||||||| |
|
|
| T |
6242115 |
agtatagtagactaacttaatattgcaaaaaagtagtgcccacgtttcaaaatattcttttacattcactttttttttatcgttattattttgcaagaga |
6242016 |
T |
|
| Q |
450 |
ctatctctttctcctagcttcaaagaggttttcctacaaaattgatttgctacaccgaatggnnnnnnnnctcttttatcttctactcaacttcttcttc |
549 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| || ||||||||||||||||| || || ||||||||||||||||| |||||||||||| |
|
|
| T |
6242015 |
ctatctctttctccaaacttcaaagaggttttcttaaaaaattgatttgctacatcggattttttttcttctcttttatcttctacttaacttcttcttc |
6241916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 500
Target Start/End: Complemental strand, 15641907 - 15641840
Alignment:
| Q |
433 |
tgttattttgcaagagactatctctttctcctagcttcaaagaggttttcctacaaaattgatttgct |
500 |
Q |
| |
|
|||||||||||||||| | |||||| |||| ||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
15641907 |
tgttattttgcaagaggcgttctcttcctccaagcttcaaagatgttttcctacagaatttatttgct |
15641840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 386
Target Start/End: Original strand, 10850715 - 10850754
Alignment:
| Q |
347 |
attaagtatagtaggctatcttaatattgcaaaaaagtag |
386 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
10850715 |
attaagtatagtaagctatcttaatattgcaaaaaggtag |
10850754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 386
Target Start/End: Original strand, 10878229 - 10878268
Alignment:
| Q |
347 |
attaagtatagtaggctatcttaatattgcaaaaaagtag |
386 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
10878229 |
attaagtatagtaagctatcttaatattgcaaaaaggtag |
10878268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 486
Target Start/End: Complemental strand, 15622057 - 15622006
Alignment:
| Q |
436 |
tattttgcaagagac-tatctctttctcctagcttcaaagaggttttcctac |
486 |
Q |
| |
|
||||||||||||||| | |||||| |||| |||||||||||||||||||||| |
|
|
| T |
15622057 |
tattttgcaagagacgtttctcttcctccaagcttcaaagaggttttcctac |
15622006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 486
Target Start/End: Complemental strand, 15643897 - 15643846
Alignment:
| Q |
436 |
tattttgcaagagac-tatctctttctcctagcttcaaagaggttttcctac |
486 |
Q |
| |
|
||||||||||||||| | |||||| |||| |||||||||||||||||||||| |
|
|
| T |
15643897 |
tattttgcaagagacgtttctcttcctccaagcttcaaagaggttttcctac |
15643846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 486
Target Start/End: Complemental strand, 15652947 - 15652896
Alignment:
| Q |
436 |
tattttgcaagagac-tatctctttctcctagcttcaaagaggttttcctac |
486 |
Q |
| |
|
||||||||||||||| | |||||| |||| |||||||||||||||||||||| |
|
|
| T |
15652947 |
tattttgcaagagacgtttctcttcctccaagcttcaaagaggttttcctac |
15652896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 503
Target Start/End: Original strand, 43724873 - 43724943
Alignment:
| Q |
433 |
tgttattttgcaagagactatctctttctcctagcttcaaagaggttttcctacaaaattgatttgctaca |
503 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | ||| ||| ||||||||| ||||| | |||||||||| |
|
|
| T |
43724873 |
tgttattttgcaagagacgttctctttctccaaactttaaataggttttcccgcaaaaattatttgctaca |
43724943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 385
Target Start/End: Complemental strand, 16724148 - 16724110
Alignment:
| Q |
347 |
attaagtatagtaggctatcttaatattgcaaaaaagta |
385 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16724148 |
attaagtatagtaaactatcttaatattgcaaaaaagta |
16724110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 10682669 - 10682732
Alignment:
| Q |
433 |
tgttattttgcaagagactatctctttctcctagcttcaaagaggttttcctacaaaattgattt |
497 |
Q |
| |
|
||||||||||||||| | ||||||||||| |||||||||||| |||| |||||||||| |||| |
|
|
| T |
10682669 |
tgttattttgcaagacatgttctctttctccaagcttcaaagagatttt-ctacaaaatttattt |
10682732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1261 times since January 2019
Visitors: 3642