View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0532_low_1 (Length: 711)
Name: NF0532_low_1
Description: NF0532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0532_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 646; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 1 - 697
Target Start/End: Original strand, 36763734 - 36764430
Alignment:
| Q |
1 |
caccgtgactttataagtttccgaacacgcgcttagtagtggttgtgctaattcatagtggttagtaatagttgtgtttttctttggttcaacctggatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
36763734 |
caccgtgactttataagtttccgaacacgtgcttagtagtggctgtgctaattcatagtggttagtaataattgtgtttttctttggttcaacctgaatt |
36763833 |
T |
|
| Q |
101 |
ctgttcaggccactatttattttaaggatgtgcaagttgttttaacaatatttagcttctactatgttcaaatgattcaagtgtatttgggtttctaggt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36763834 |
ctgttcaggccactatttattttaaggatatgcgagttgttttaacaatatttagcttctactatgttcaaatgattcaagtgtatttgggtttctaggt |
36763933 |
T |
|
| Q |
201 |
tcgtggctttttggggcaaccacaacttgagaatgcactcacaggcatggacttggtagttatacctgctggtgtgccaaggaaacctggaatgaccagg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36763934 |
tcgtggctttttggggcaaccacaacttgagaatgcactcacaggcatggacttggtagttatacctgctggtgtgccaaggaaacctggaatgaccagg |
36764033 |
T |
|
| Q |
301 |
gacgacttatttaagataaatgctggaattgtgagaaccctttgcgaaggaattgccaaatgttgccccaatgcgattgtcaacttgattagcaatccag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36764034 |
gacgacttatttaagataaatgctggaattgtgagaaccctttgcgaaggaattgccaaatgttgccccaatgcgattgtcaacttgattagcaatccag |
36764133 |
T |
|
| Q |
401 |
tgaattccactgtgccaattgctgctgaggtcttcaagaaagctggtacatatgatccaaagcgacttttaggagttacagccctcgatgttgtgagggc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36764134 |
tgaattccactgtgccaattgctgctgaggtcttcaagaaagctggtacatatgatccaaagcgacttttaggagttacagccctcgatgttgtgagggc |
36764233 |
T |
|
| Q |
501 |
aaatacttttgtggtaagcatagctctcctcttctatctcataattgaatttccttcctactattgtatgagtaaatgcctgtgtannnnnnnnnctctt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
36764234 |
aaatacttttgtggtaagcatagctctcctcttctatctcataattgaatttccttcctactattgtatgagtaaatgcctgtgtatttttttttctctt |
36764333 |
T |
|
| Q |
601 |
gcaggcagaggtacttggtgttgatccaagagacgttgatgttccagttgtaggaggtcatgcaggagtcacaatattgcctcttttgtcacaggtt |
697 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36764334 |
gcaggcagaggtacttggtgttgatccaagagacgttgatgttccagttgtaggaggtcatgcaggagtcacaatattgcctcttttgtcacaggtt |
36764430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 502 - 697
Target Start/End: Complemental strand, 11657400 - 11657205
Alignment:
| Q |
502 |
aatacttttgtggtaagcatagctctcctcttctatctcataattgaatttccttcctactattgtatgagtaaatgcctgtgtannnnnnnnn-ctctt |
600 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||||||||||| ||||| ||||| |
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|
| T |
11657400 |
aatacttttgtggtaagcatagctttcctcttctatctcataactgaatttccttcttactataatatgagtaaatgcg-gtgtactttccttttctctt |
11657302 |
T |
|
| Q |
601 |
gcaggcagaggtacttggtgttgatccaagagacgttgatgttccagttgtaggaggtcatgcaggagtcacaatattgcctcttttgtcacaggtt |
697 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11657301 |
gcaggcagaggtacttggtgttgatccaagagaagttgatgttcctgtggtaggaggtcatgcaggagtcacaatattgcctcttttatcacaggtt |
11657205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 502 - 697
Target Start/End: Complemental strand, 50233467 - 50233272
Alignment:
| Q |
502 |
aatacttttgtggtaagcatagctctcctcttctatctcataattgaatttccttcctactattgtatgagtaaatgcctgtgtannnnnnnnn-ctctt |
600 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||| |
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|
| T |
50233467 |
aatactttcgtggtaagcatagctttcctcttctatctcataattgaatttccttcctactataatatgagtaaatgcg-gcgtactttccttttctctt |
50233369 |
T |
|
| Q |
601 |
gcaggcagaggtacttggtgttgatccaagagacgttgatgttccagttgtaggaggtcatgcaggagtcacaatattgcctcttttgtcacaggtt |
697 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||| ||||||||||||||||| ||| ||||| |
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| T |
50233368 |
gcaggcagaggtacttggtgttgatccaagagaagttaatgttccagtggtaggaggtcatgcaggagttacaatattgcctcttttatcataggtt |
50233272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 8e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 502 - 697
Target Start/End: Original strand, 7391445 - 7391640
Alignment:
| Q |
502 |
aatacttttgtggtaagcatagctctcctcttctatctcataattgaatttccttcctactattgtatgagtaaatgcctgtgtannnnnnnnn-ctctt |
600 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| ||||| |
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|
| T |
7391445 |
aatacttttgtggtaagcatagctttcctcttctatctcataattgaatttccttcttactataatatgagtaaatgcg-gtgtactttccttttctctt |
7391543 |
T |
|
| Q |
601 |
gcaggcagaggtacttggtgttgatccaagagacgttgatgttccagttgtaggaggtcatgcaggagtcacaatattgcctcttttgtcacaggtt |
697 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
7391544 |
gcaggcagaggtacttggtgttgatccaagagaagttgatgttcctgtggtaggaggtcatgcaggagtcacaatattgcctcttttatcacaggtt |
7391640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 502 - 697
Target Start/End: Complemental strand, 19585667 - 19585472
Alignment:
| Q |
502 |
aatacttttgtggtaagcatagctctcctcttctatctcataattgaatttccttcctactattgtatgagtaaatgcctgtgtannnnnnnnn-ctctt |
600 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| ||||| |
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|
| T |
19585667 |
aatacttttgtggtaagcatagctttcctcttctatctcataattgaatttccttcttactataatatgagtaaatgcg-gtgtactttccttttctctt |
19585569 |
T |
|
| Q |
601 |
gcaggcagaggtacttggtgttgatccaagagacgttgatgttccagttgtaggaggtcatgcaggagtcacaatattgcctcttttgtcacaggtt |
697 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
19585568 |
gcaggcagaggtacttggtgttgatccaagagaagttgatgttcctgtggtaggaggtcatgcaggagtcacaatattgcctcttttatcacaggtt |
19585472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 196 - 476
Target Start/End: Complemental strand, 4990954 - 4990674
Alignment:
| Q |
196 |
taggttcgtggctttttggggcaaccacaacttgagaatgcactcacaggcatggacttggtagttatacctgctggtgtgccaaggaaacctggaatga |
295 |
Q |
| |
|
|||||||| || |||||||||||| || |||||| ||||||| ||||| ||||| |||||| | || ||||||||||| || | ||||||||||||| |
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|
| T |
4990954 |
taggttcgaggatttttggggcaaaatcagcttgaggatgcactaacaggtatggatttggtaatcattcctgctggtgttccccgtaaacctggaatga |
4990855 |
T |
|
| Q |
296 |
ccagggacgacttatttaagataaatgctggaattgtgagaaccctttgcgaaggaattgccaaatgttgccccaatgcgattgtcaacttgattagcaa |
395 |
Q |
| |
|
| || || || | || || || |||||||| || || | || ||||| |||| |||||| || || || || |||||||| |||||||| ||||| |
|
|
| T |
4990854 |
caagagatgatctcttcaatattaatgctgggatcgttaagacgctttgtgaagcaattgcaaagcaatgtcctaaggcgattgtaaacttgataagcaa |
4990755 |
T |
|
| Q |
396 |
tccagtgaattccactgtgccaattgctgctgaggtcttcaagaaagctggtacatatgatccaaagcgacttttaggagt |
476 |
Q |
| |
|
|||||| || |||||||| || ||||| |||||||| ||||| | ||||||||| |||||||| ||| |||| || ||||| |
|
|
| T |
4990754 |
tccagttaactccactgttcctattgcggctgaggttttcaaaagagctggtacttatgatcccaagagactgttgggagt |
4990674 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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